Hg_chrom1_TN10mRNA_725
Organism: Heterodera glycines Gene Locus: chr1:10530161-10533948 Feature type: polypeptideProtein Sequence
Length: 545
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.661 | 1.024 | 1.101 | 0.443 | 1.131 | 0.8 | 0.655 | 0.826 | 1.509 | 1.265 | 1.807 | 1.727 | 1.019 | 0.6 | 1.348 | 1.075 | 0.602 | 0.806 | 0.988 | 0.971 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_690
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
nucleus
|
RKRLAHYKRADYRRVPK,KKGKVISHSLISQNKTKTR
|
— | — | — | — | — |
0.937
|
0.373
|
0.000
|
— |
0.391
|
0.241
|
0.031
|
0.239
|
0.078
|
0.137
|
0.329
|
0.003
|
0.460
|
0.681
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005712
|
1.000
|
1.000
|
Hsc_gene_25712.t1
|
Hsc_gene_25712.t1
|
— |
Q6C7U0.1 Serine/threonine-protein kinase ATG1 [Yarrowia lipolytica CLIB122]
|
KAI3413237.1 3-phosphoinositide dependent protein kinase-1 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.920|GO:0009987_0.793|GO:0005575_0.768|GO:0110165_0.768|GO:0003674_0.655|GO:0016020_0.615|GO:0065007_0.592|GO:0005622_0.570|GO:0050789_0.551|GO:0043226_0.520|GO:0008152_0.517|GO:0044238_0.515|GO:0003824_0.513|GO:0044237_0.511|GO:0043170_0.505
|
IPR000719+82-428_82-438_84-426+|IPR011009+86-433+|IPR017441+88-118+
|
SM00220+82-428+
|
PF00069+84-426+Protein_kinase_domain
|
— |
PTHR44167+38-502+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
501-545
|
1.000
|
1-500
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
62694.670
|
10.197
|
35.500
|
33.028
|
9.908
|
51.743
|
48.257
|
20.183
|
12.844
|
42.569
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
skyblue3
|
1477.095
|
13.614
|
75.530
|
127.596
|
48.725
|
30.803
|
42.594
|
40.999
|
1161.696
|
5448.570
|
3611.338
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.242
|
3.091
|
0.864
|
-1.415
|
-0.650
|
— | — | — | — | — |
-5.078
|
— | — |