Hg_chrom1_TN10mRNA_73
Organism: Heterodera glycines Gene Locus: chr1:484028-485031 Feature type: polypeptideProtein Sequence
Length: 145
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.882 | 1.123 | 0.502 | 0.713 | 1.839 | 1.061 | 0.493 | 0.0 | 1.533 | 0.932 | 1.776 | 2.434 | 1.533 | 0.663 | 0.985 | 0.591 | 0.791 | 1.149 | 0.531 | 0.811 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_69
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
KKCIKYEKETDRAARKVYK
|
— | — |
43-82
|
0.911
|
1-19
|
0.832
|
1.000
|
0.000
|
0.000
|
0.335
|
0.413
|
0.131
|
0.402
|
0.087
|
0.044
|
0.087
|
0.097
|
0.175
|
0.782
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002865
|
1.000
|
2.000
|
Hsc_gene_15973.t1;Hsc_gene_8193.t1
|
— | — |
G5EDZ9.1 Cystatin cpi-1 [Caenorhabditis elegans]
|
KAI1719396.1 cystatin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004869
|
GO:0005575_0.712|GO:0110165_0.704|GO:0003674_0.584|GO:0005488_0.575|GO:0008150_0.575|GO:0005515_0.535
|
IPR000010+25-135_28-116_28-129+|IPR046350+27-131+
|
SM00043+25-135+
|
PF00031+28-116+Cystatin_domain
|
— |
PTHR46186+4-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-145
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
16690.520
|
9.073
|
4.000
|
30.345
|
8.966
|
48.276
|
51.724
|
16.552
|
13.793
|
41.379
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
746.469
|
4.568
|
5.497
|
1.998
|
37.555
|
479.400
|
8.317
|
7578.896
|
0.000
|
222.216
|
126.981
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-1.355
|
4.200
|
3.687
|
-5.838
|
3.888
|
-9.691
|
-8.636
|
— | — | — |
7.977
|