Hg_chrom1_TN10mRNA_732
Organism: Heterodera glycines Gene Locus: chr1:10601167-10613648 Feature type: polypeptideProtein Sequence
Length: 726
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 0.961 | 1.277 | 0.665 | 0.826 | 2.508 | 0.722 | 1.997 | 0.796 | 1.229 | 0.689 | 1.458 | 1.301 | 0.636 | 1.321 | 0.807 | 0.903 | 1.085 | 0.53 | 0.446 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_697
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KLPRTQRRKLRRAK
|
33-53
|
0.988
|
17-45
|
0.997
|
— | — |
0.000
|
— | — |
0.817
|
0.195
|
0.006
|
0.317
|
0.047
|
0.172
|
0.091
|
0.059
|
0.055
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005715
|
1.000
|
1.000
|
Hsc_gene_25707.t1
|
Hsc_gene_20277.t1;Hsc_gene_20277.t2;Hsc_gene_20277.t3;Hsc_gene_25716.t1;Hsc_gene_5379.t1
|
— | — | — |
WP_029707107
|
0.600
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.960|GO:0005575_0.921|GO:0009987_0.921|GO:0110165_0.908|GO:0003674_0.885|GO:0065007_0.872|GO:0005622_0.856|GO:0050789_0.856|GO:0050794_0.835|GO:0016020_0.828|GO:0005488_0.819|GO:0008152_0.805|GO:0050896_0.803|GO:0044238_0.792|GO:0043226_0.787|GO:0005515_0.784|GO:0043170_0.778|GO:0051716_0.777|GO:0043229_0.772|GO:0005737_0.756|GO:0048519_0.754|GO:0071944_0.753|GO:0005886_0.742|GO:0007154_0.742|GO:0023052_0.742|GO:0003824_0.739|GO:0019538_0.737|GO:0043227_0.735|GO:0007165_0.727|GO:0006950_0.722|GO:0010646_0.719|GO:0023051_0.718|GO:0048583_0.716|GO:0043231_0.710|GO:0097159_0.707|GO:0009966_0.705|GO:0043412_0.702|GO:0036211_0.701|GO:0033554_0.697|GO:0016740_0.693|GO:0016787_0.693|GO:0035556_0.691|GO:1902531_0.691|GO:0036094_0.687|GO:0065009_0.687|GO:0080134_0.685|GO:0043167_0.683|GO:0050790_0.682|GO:0044092_0.676|GO:0042802_0.675|GO:0051336_0.675|GO:0043086_0.674|GO:0034976_0.673|GO:0003924_0.670|GO:0006986_0.670|GO:0016462_0.670|GO:0016817_0.670|GO:0016818_0.670|GO:0017111_0.670|GO:0018117_0.670|GO:0018175_0.670|GO:0030968_0.670|GO:0034260_0.670|GO:0034620_0.670|GO:0035966_0.670|GO:0035967_0.670|GO:0036498_0.670|GO:0043087_0.670|GO:0051346_0.670|GO:0080135_0.670|GO:1900101_0.670|GO:1903894_0.670|GO:1905897_0.670|GO:0016772_0.664|GO:0043168_0.664|GO:1901363_0.662|GO:0000166_0.660|GO:1901265_0.660|GO:0042803_0.658|GO:0046983_0.658|GO:0017076_0.657|GO:0030554_0.657|GO:0097367_0.657|GO:0005524_0.656|GO:0032553_0.656|GO:0032555_0.656|GO:0032559_0.656|GO:0035639_0.656|GO:0016779_0.654|GO:0030544_0.650|GO:0031072_0.650|GO:0051087_0.650|GO:0070566_0.650|GO:0070733_0.650|GO:0005773_0.605|GO:0012505_0.603|GO:0031090_0.576|GO:0005783_0.557|GO:0031984_0.551|GO:0005789_0.546|GO:0042175_0.546|GO:0098827_0.546
|
IPR036597+375-461+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31;189-321;537-580
|
3.000
|
32-188;322-536;581-726
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.513
|
81998.460
|
6.955
|
7.500
|
26.997
|
10.882
|
52.066
|
47.934
|
15.014
|
11.983
|
48.209
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
345.449
|
281.531
|
554.193
|
496.693
|
546.024
|
494.396
|
830.239
|
407.867
|
129.646
|
59.999
|
89.848
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
0.682
|
— | — | — |
0.758
|
-0.382
|
1.168
|
— | — | — | — | — |
No JSON data available for plots.