Hg_chrom1_TN10mRNA_734
Organism: Heterodera glycines Gene Locus: chr1:10686356-10704972 Feature type: polypeptideProtein Sequence
Length: 627
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.094 | 1.039 | 1.044 | 0.99 | 0.771 | 1.431 | 0.759 | 1.435 | 1.453 | 1.121 | 0.604 | 1.126 | 1.063 | 1.104 | 1.465 | 0.638 | 0.915 | 1.087 | 0.981 | 0.61 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_699
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.918
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.002
|
— | — |
0.557
|
0.334
|
0.042
|
0.554
|
0.061
|
0.181
|
0.041
|
0.306
|
0.167
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000749
|
1.000
|
5.000
|
Hsc_gene_2755.t1;Hsc_gene_5370.t1;Hsc_gene_5372.t1;Hsc_gene_5629.t1;Hsc_gene_5629.t2
|
Hsc_gene_5370.t1;Hsc_gene_5371.t1
|
— |
P33216.3 Mannitol 2-dehydrogenase [Cereibacter sphaeroides]
|
WP_274425686.1 mannitol dehydrogenase family protein [Chelativorans sp. YIM 93263]
|
WP_091911501
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0016491|GO:0019594
|
GO:0003674_0.755|GO:0003824_0.623|GO:0008150_0.532|GO:0016491_0.530|GO:0016614_0.511|GO:0016616_0.511
|
IPR000669+40-50_192-205_232-245_262-277+|IPR008927+297-414_460-625+|IPR013118+297-413_464-608+|IPR013131+39-289+|IPR013328+296-430_445-625+|IPR023027+232-244+|IPR036291+22-295+|IPR050988+464-625+
|
— |
PF01232+39-289+Mannitol_dehydrogenase_Rossmann_domain|PF08125+297-413_464-608+Mannitol_dehydrogenase_C-terminal_domain
|
— |
PTHR43362+464-625+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-627
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
69793.990
|
8.034
|
14.000
|
24.402
|
10.048
|
44.498
|
55.502
|
14.035
|
10.367
|
51.834
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
1412.375
|
358.115
|
902.739
|
582.158
|
432.445
|
683.776
|
355.098
|
765.718
|
184.673
|
4510.618
|
2656.642
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.102
|
0.564
|
-0.522
|
-0.461
|
0.676
|
-0.935
|
— |
-0.964
|
-4.731
|
— |
-3.095
|
— | — |
No JSON data available for plots.