Hg_chrom1_TN10mRNA_738
Organism: Heterodera glycines Gene Locus: chr1:10734213-10736492 Feature type: polypeptideProtein Sequence
Length: 140
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 0.498 | 1.429 | 0.985 | 1.548 | 0.733 | 1.105 | 1.786 | 1.27 | 1.448 | 0.216 | 1.681 | 1.786 | 1.511 | 1.02 | 0.306 | 0.703 | 0.974 | 0.549 | 1.05 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_703
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.746
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-24
|
0.977
|
1.000
|
0.000
|
0.000
|
0.349
|
0.471
|
0.043
|
0.397
|
0.346
|
0.172
|
0.159
|
0.006
|
0.349
|
0.596
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005718
|
1.000
|
1.000
|
Hsc_gene_2752.t1
|
Hsc_gene_2752.t1
|
— | — |
AKV89656.1 transthyretin-like protein 2, partial [Meloidogyne javanica]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009986
|
GO:0008150_0.934|GO:0003674_0.876|GO:0005575_0.858|GO:0110165_0.858|GO:0009987_0.846|GO:0005488_0.795|GO:0005515_0.795|GO:0016020_0.753|GO:0032502_0.749|GO:0048856_0.744|GO:0051179_0.727|GO:0071840_0.720|GO:0006810_0.719|GO:0051234_0.719|GO:0016043_0.718|GO:0005102_0.716|GO:0005576_0.702|GO:0008219_0.699|GO:0012501_0.696|GO:0006915_0.694|GO:0071705_0.691|GO:0033036_0.688|GO:0006996_0.686|GO:0042802_0.686|GO:0061024_0.686|GO:0016192_0.683|GO:0016050_0.681|GO:0098657_0.680|GO:0006900_0.677|GO:0010876_0.677|GO:0006897_0.676|GO:0010324_0.676|GO:0006869_0.675|GO:0006909_0.670|GO:0006910_0.670|GO:0008037_0.670|GO:0015748_0.670|GO:0015914_0.670|GO:0015917_0.670|GO:0038024_0.670|GO:0043277_0.670|GO:0043654_0.670|GO:0060090_0.670|GO:1902742_0.670|GO:0042803_0.664|GO:0043226_0.664|GO:0046983_0.664|GO:0043227_0.663|GO:0008289_0.660|GO:0005543_0.654|GO:0030674_0.654|GO:0001786_0.650|GO:0005124_0.650|GO:0072341_0.650|GO:0031982_0.618|GO:0009986_0.579|GO:0043230_0.578|GO:0065010_0.577|GO:1903561_0.577
|
IPR001534+9-113_30-111+|IPR038479+25-134+
|
— |
PF01060+30-111+Transthyretin-like_family
|
— |
PTHR21700+9-113+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-140
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.935
|
15786.930
|
4.171
|
-12.500
|
27.143
|
14.286
|
38.571
|
61.429
|
10.000
|
17.143
|
47.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2998.535
|
4086.061
|
6053.240
|
1414.617
|
1036.527
|
3132.996
|
3879.258
|
8200.537
|
2200.280
|
1042.168
|
1538.502
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.340
|
-1.668
|
-1.990
|
-0.481
|
1.611
|
0.317
|
1.287
|
-0.940
|
— | — | — | — | — |