Hg_chrom1_TN10mRNA_740
Organism: Heterodera glycines Gene Locus: chr1:10741435-10744799 Feature type: polypeptideProtein Sequence
Length: 355
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.95 | 1.572 | 0.922 | 0.68 | 0.657 | 0.795 | 0.671 | 1.127 | 1.753 | 0.914 | 1.451 | 1.657 | 0.939 | 0.704 | 0.172 | 0.845 | 0.97 | 1.11 | 2.167 | 1.823 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_705
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_2750
|
— | — |
9-Migratory
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.216
|
— | — |
0.337
|
0.180
|
0.024
|
0.408
|
0.158
|
0.260
|
0.235
|
0.011
|
0.356
|
0.669
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005719
|
1.000
|
1.000
|
Hsc_gene_2750.t1
|
Hsc_gene_20726.t1;Hsc_gene_2750.t1
|
— |
P15704.1 Endoglucanase [Clostridium saccharobutylicum]
|
AAN32884.1 cellulase ENG-5 [Heterodera glycines];AAP97436.1 cellulase ENG-5 [Heterodera glycines]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000272|GO:0004553|GO:0005975
|
GO:0008150_0.940|GO:0003674_0.882|GO:0003824_0.830|GO:0008152_0.786|GO:0044238_0.759|GO:0016787_0.720|GO:0043170_0.716|GO:0009056_0.712|GO:0005975_0.695|GO:0009057_0.687|GO:0005976_0.686|GO:0044042_0.675|GO:0000272_0.674|GO:0016052_0.674|GO:0009251_0.670|GO:0030243_0.670|GO:0030245_0.670|GO:0051273_0.670|GO:0051275_0.670|GO:0016798_0.668|GO:0004553_0.666|GO:0008810_0.650
|
IPR001547+68-308+|IPR017853+47-353+|IPR018087+177-186+
|
— |
PF00150+68-308+Cellulase_(glycosyl_hydrolase_family_5)
|
— |
PTHR34142+49-321+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
40099.210
|
8.494
|
9.000
|
21.690
|
14.648
|
43.380
|
56.620
|
12.676
|
9.014
|
50.423
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
5613.236
|
33.598
|
2050.669
|
1108.678
|
120.045
|
24.312
|
22.515
|
813.648
|
30350.285
|
230.145
|
13138.777
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.705
|
4.906
|
-0.780
|
-3.240
|
-2.288
|
— |
4.971
|
-5.037
|
6.931
|
-4.628
|
— | — | — |
No JSON data available for plots.