Hg_chrom1_TN10mRNA_746
Organism: Heterodera glycines Gene Locus: chr1:10800803-10807506 Feature type: polypeptideProtein Sequence
Length: 1,032
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.935 | 1.577 | 0.916 | 0.301 | 1.147 | 1.143 | 0.761 | 1.26 | 1.141 | 1.1 | 0.866 | 1.482 | 1.669 | 0.634 | 1.147 | 0.927 | 0.937 | 0.778 | 1.565 | 0.94 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_711
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.118
|
0.051
|
0.008
|
0.200
|
0.229
|
0.638
|
0.513
|
0.009
|
0.645
|
0.426
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005721
|
1.000
|
1.000
|
Hsc_gene_2740.t1
|
Hsc_gene_2740.t1
|
— |
Q60HE9.1 Lysosomal alpha-mannosidase [Macaca fascicularis]
|
KAF7635204.1 Alpha-mannosidase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004559|GO:0005975|GO:0006013|GO:0030246
|
GO:0005575_0.757|GO:0110165_0.753|GO:0016020_0.673|GO:0008150_0.654|GO:0003674_0.648|GO:0005622_0.617|GO:0005737_0.579|GO:0043226_0.568|GO:0043229_0.558|GO:0043227_0.540|GO:0043231_0.533
|
IPR000602+65-386+|IPR011013+509-1031+|IPR011330+58-388+|IPR011682+642-865+|IPR013780+512-610+|IPR015341+391-475_391-493+|IPR027291+64-346+|IPR028995+390-499+|IPR037094+347-435_442-500+|IPR041147+945-1027+|IPR050843+19-1030+
|
SM00872+391-475+
|
PF01074+65-386+Glycosyl_hydrolases_family_38_N-terminal_domain|PF07748+642-865+Glycosyl_hydrolases_family_38_C-terminal_domain|PF09261+391-493+Alpha_mannosidase_middle_domain|PF17677+945-1027+Glycosyl_hydrolases_family_38_C-terminal_beta_sandwich_domain
|
G3DSA:1.20.1270.50:FF:000002+347-432+Alpha-mannosidase
|
PTHR11607+19-1030+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1032
|
1o7d_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
117520.650
|
6.986
|
7.000
|
25.775
|
13.760
|
49.225
|
50.775
|
13.857
|
11.919
|
47.771
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
orange
|
1729.570
|
467.365
|
3527.804
|
1117.318
|
806.639
|
1034.029
|
965.576
|
2285.567
|
3773.324
|
910.265
|
2137.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.690
|
1.120
|
-1.552
|
-0.502
|
0.373
|
— |
1.043
|
-1.104
|
— |
-1.591
|
— | — | — |
No JSON data available for plots.