Hg_chrom1_TN10mRNA_752
Organism: Heterodera glycines Gene Locus: chr1:10831431-10834719 Feature type: polypeptideProtein Sequence
Length: 647
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.485 | 1.042 | 0.955 | 0.48 | 1.752 | 1.229 | 0.736 | 0.773 | 0.893 | 1.191 | 1.897 | 1.637 | 1.46 | 0.684 | 0.82 | 1.016 | 0.76 | 0.749 | 0.594 | 0.955 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_717
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_2729;Hsc_gene_2733
|
— |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RKKK,KKYYAVVRNANAKKQKTK,KKGAKCVEAKCHNCKRRPD,AKKQKTKASPLLKEKAKKDTK
|
— | — | — | — |
1-24
|
0.962
|
1.000
|
0.000
|
0.000
|
0.352
|
0.158
|
0.028
|
0.530
|
0.147
|
0.226
|
0.268
|
0.004
|
0.268
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005725
|
2.000
|
0.000
|
0.000
|
— | — |
O14986.2 Phosphatidylinositol 4-phosphate 5-kinase type-1 beta [Homo sapiens]
|
XP_014891576.1 PREDICTED: phosphatidylinositol 4-phosphate 5-kinase type-1 gamma-like isoform X3 [Poecilia latipinna]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046488|GO:0052742
|
GO:0005575_0.906|GO:0110165_0.906|GO:0008150_0.857|GO:0005622_0.820|GO:0009987_0.796|GO:0016020_0.769|GO:0003674_0.729|GO:0005737_0.646|GO:0008152_0.645|GO:0043226_0.640|GO:0044238_0.624|GO:0044237_0.611|GO:0071944_0.603|GO:0043229_0.590|GO:0003824_0.588|GO:0005886_0.585|GO:0016740_0.568|GO:0071840_0.559|GO:0016772_0.555|GO:0043227_0.553|GO:0016301_0.550|GO:0016773_0.550|GO:0001727_0.545|GO:0052742_0.545|GO:0016043_0.543|GO:0009058_0.526|GO:0043231_0.518|GO:0006793_0.516|GO:0006796_0.516|GO:0019637_0.508|GO:0006629_0.505|GO:0065007_0.505|GO:0044255_0.504|GO:0006644_0.502|GO:0006650_0.502|GO:0046486_0.502
|
IPR002498+81-503_133-504_176-497+|IPR023610+59-498+|IPR027483+287-500+|IPR027484+70-281+
|
SM00330+133-504+
|
PF01504+176-497+Phosphatidylinositol-4-phosphate_5-Kinase
|
— |
PTHR23086+59-498+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
634-647
|
1.000
|
1-633
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
74495.930
|
8.333
|
10.000
|
33.849
|
10.819
|
54.869
|
45.131
|
18.083
|
15.765
|
41.731
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
61823.681
|
33.403
|
16648.805
|
6816.352
|
1013.819
|
86.174
|
119.459
|
288.536
|
343089.792
|
3783.804
|
149200.656
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.733
|
7.534
|
-1.181
|
-2.781
|
-3.541
|
0.481
|
— | — |
6.409
|
-5.483
|
— | — | — |