Hg_chrom1_TN10mRNA_754
Organism: Heterodera glycines Gene Locus: chr1:10844236-10847694 Feature type: polypeptideProtein Sequence
Length: 485
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 1.391 | 0.412 | 1.066 | 0.481 | 0.793 | 0.761 | 1.031 | 1.649 | 1.978 | 0.75 | 1.819 | 2.405 | 0.793 | 0.884 | 0.825 | 0.946 | 0.937 | 1.11 | 0.243 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_719
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKWIQNFAVRTRKTKS
|
— | — | — | — | — | — |
0.496
|
— | — |
0.095
|
0.204
|
0.012
|
0.107
|
0.459
|
0.233
|
0.261
|
0.002
|
0.691
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005726
|
1.000
|
1.000
|
Hsc_gene_2724.t1
|
Hsc_gene_2724.t1;Hsc_gene_2724.t2
|
— | — |
KAI3416270.1 protein hexamerization [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
— |
IPR002657+154-335+|IPR004710+137-461+|IPR038770+127-435+
|
— |
PF01758+154-335+Sodium_Bile_acid_symporter_family
|
— |
PTHR10361+137-461+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
450-485
|
1.000
|
1-449
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.802
|
54181.480
|
9.932
|
25.000
|
16.495
|
12.990
|
37.113
|
62.887
|
11.340
|
5.155
|
46.598
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
42.958
|
21.811
|
158.023
|
47.021
|
27.189
|
29.111
|
102.046
|
57.605
|
9.605
|
14.683
|
12.507
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.626
|
0.969
|
-1.639
|
-0.825
|
— |
1.818
|
0.877
|
0.965
|
— | — | — | — | — |
No JSON data available for plots.