Hg_chrom1_TN10mRNA_756
Organism: Heterodera glycines Gene Locus: chr1:10852571-10857130 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.178 | 1.208 | 1.133 | 0.0 | 1.082 | 1.132 | 0.866 | 0.649 | 1.039 | 1.264 | 1.259 | 1.833 | 2.165 | 0.699 | 0.689 | 0.705 | 0.554 | 1.141 | 0.2 | 0.764 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_721
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.268
|
0.281
|
0.247
|
0.496
|
0.160
|
0.146
|
0.104
|
0.053
|
0.149
|
0.928
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001682
|
2.000
|
2.000
|
Hsc_gene_2722.t1;Hsc_gene_2722.t2
|
Hsc_gene_2722.t1
|
— |
Q60854.1 Serpin B6 [Mus musculus]
|
KAH7723002.1 ANISERP protein [Aphelenchus avenae]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.802|GO:0110165_0.795|GO:0008150_0.717|GO:0003674_0.618|GO:0016020_0.598|GO:0005622_0.597|GO:0009987_0.549|GO:0005737_0.540|GO:0043226_0.522|GO:0005488_0.521
|
IPR000215+23-374+|IPR023796+23-375_29-385+|IPR036186+17-381+|IPR042178+27-349+|IPR042185+187-374+
|
SM00093+29-385+
|
PF00079+23-375+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+23-374+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-385
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
42777.090
|
6.081
|
-1.500
|
25.714
|
11.948
|
43.636
|
56.364
|
12.987
|
12.727
|
48.312
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
salmon
|
301.473
|
34.115
|
94.078
|
35.987
|
22.411
|
94.431
|
44.079
|
582.177
|
28.973
|
956.986
|
559.266
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.236
|
— |
-1.278
|
-0.712
|
2.089
|
-1.092
|
2.522
|
-3.583
|
-5.233
|
— |
-5.146
|
— |
7.575
|
No JSON data available for plots.