Hg_chrom1_TN10mRNA_758
Organism: Heterodera glycines Gene Locus: chr1:10884012-10887042 Feature type: polypeptideProtein Sequence
Length: 642
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.471 | 1.087 | 0.906 | 0.537 | 1.739 | 1.118 | 0.76 | 0.935 | 1.004 | 1.158 | 1.841 | 1.649 | 1.558 | 0.749 | 0.858 | 0.957 | 0.613 | 0.779 | 0.719 | 1.008 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_722
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_2729;Hsc_gene_2733
|
— |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RKKK,AKKQKKRKH,KKYYAVVRNANAKKQKKRK
|
— | — | — | — |
1-24
|
0.974
|
1.000
|
0.000
|
0.000
|
0.427
|
0.221
|
0.030
|
0.480
|
0.100
|
0.230
|
0.240
|
0.005
|
0.279
|
0.174
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005725
|
2.000
|
0.000
|
0.000
|
Hsc_gene_2733.t4
|
— |
O14986.2 Phosphatidylinositol 4-phosphate 5-kinase type-1 beta [Homo sapiens]
|
XP_017988657.1 HFL195Cp [Eremothecium sinecaudum];AMD21661.1 HFL195Cp [Eremothecium sinecaudum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046488|GO:0052742
|
GO:0005575_0.885|GO:0110165_0.882|GO:0008150_0.846|GO:0005622_0.784|GO:0009987_0.781|GO:0003674_0.734|GO:0016020_0.731|GO:0043226_0.632|GO:0005737_0.623|GO:0008152_0.613|GO:0003824_0.590|GO:0044238_0.590|GO:0043229_0.579|GO:0044237_0.579|GO:0071944_0.573|GO:0016740_0.560|GO:0005886_0.558|GO:0016772_0.544|GO:0016301_0.540|GO:0016773_0.540|GO:0043227_0.540|GO:0001727_0.535|GO:0052742_0.535|GO:0065007_0.525|GO:0071840_0.510|GO:0043231_0.509|GO:0050789_0.504|GO:0009058_0.501
|
IPR002498+86-507_138-508_181-501+|IPR023610+61-502+|IPR027483+292-504+|IPR027484+98-286+
|
SM00330+138-508+
|
PF01504+181-501+Phosphatidylinositol-4-phosphate_5-Kinase
|
— |
PTHR23086+61-502+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
638-642
|
1.000
|
1-637
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
74183.810
|
8.412
|
12.000
|
33.645
|
11.838
|
53.115
|
46.885
|
18.224
|
15.421
|
41.121
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
23368.883
|
41.808
|
18711.759
|
7666.444
|
900.555
|
57.300
|
131.508
|
433.388
|
122084.476
|
196.969
|
52434.472
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.577
|
7.380
|
-1.180
|
-3.122
|
-3.961
|
1.211
|
2.853
|
— |
9.160
|
-3.811
|
3.603
|
— | — |