Hg_chrom1_TN10mRNA_759
Organism: Heterodera glycines Gene Locus: chr1:10889925-10893804 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.686 | 0.814 | 0.727 | 0.862 | 0.833 | 1.667 | 1.012 | 0.25 | 0.667 | 0.946 | 0.985 | 2.059 | 1.528 | 0.577 | 1.531 | 0.643 | 0.738 | 1.136 | 0.0 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_723
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— | — |
30-50
|
0.976
|
— | — | — | — |
0.000
|
— | — |
0.099
|
0.376
|
0.003
|
0.232
|
0.173
|
0.371
|
0.170
|
0.958
|
0.064
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002974
|
2.000
|
1.000
|
Hsc_gene_2732.t1
|
Hsc_gene_2726.t1;Hsc_gene_2732.t1
|
— |
A5A6I0.1 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial [Pan troglodytes]
|
KAI1705508.1 acyl-CoA dehydrogenase, middle domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016627
|
GO:0005575_0.736|GO:0003674_0.729|GO:0110165_0.726|GO:0005622_0.655|GO:0005737_0.624|GO:0008150_0.613|GO:0016020_0.611|GO:0003824_0.600|GO:0043226_0.564|GO:0043229_0.556|GO:0016491_0.555|GO:0009987_0.536|GO:0016627_0.521|GO:0043227_0.518
|
IPR009075+28-177+|IPR009100+1-39+|IPR036250+27-182+
|
— |
PF00441+28-177+Acyl-CoA_dehydrogenase,_C-terminal_domain
|
G3DSA:1.20.140.10:FF:000011+34-181+Medium-chain_specific_acyl-CoA_dehydrogenase,_mitochondrial
|
PTHR43884+1-182+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
189-200
|
1.000
|
1-188
|
1egd_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
21767.080
|
10.017
|
10.500
|
23.500
|
8.500
|
42.500
|
57.500
|
14.500
|
9.000
|
52.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
magenta
|
166.827
|
210.988
|
148.751
|
247.845
|
276.376
|
245.039
|
196.667
|
195.913
|
37.481
|
131.167
|
91.016
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.733
|
— |
0.845
|
— | — |
-0.308
|
-0.429
|
— | — | — | — | — | — |
No JSON data available for plots.