Hg_chrom1_TN10mRNA_765
Organism: Heterodera glycines Gene Locus: chr1:10940198-10945425 Feature type: polypeptideProtein Sequence
Length: 678
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 2.024 | 0.724 | 1.068 | 0.885 | 0.908 | 0.544 | 1.254 | 1.278 | 2.013 | 0.581 | 1.041 | 1.598 | 1.163 | 1.054 | 1.475 | 0.677 | 0.313 | 0.567 | 0.477 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_729
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.538
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
KKNCQRNFCKFCFCGKIRK
|
— | — |
62-83
|
0.994
|
1-26
|
0.975
|
1.000
|
1.000
|
0.000
|
0.154
|
0.030
|
0.015
|
0.251
|
0.233
|
0.511
|
0.344
|
0.050
|
0.802
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
O75325.2 Leucine-rich repeat neuronal protein 2 [Homo sapiens]
|
KAI1722148.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.811|GO:0009987_0.768|GO:0005575_0.650|GO:0110165_0.650|GO:0065007_0.617|GO:0050789_0.609|GO:0050794_0.589
|
IPR000483+389-440+|IPR001611+59-116_82-103_121-164_129-150_177-198_201-260_225-246_307-368+|IPR003591+80-103_104-126_128-150_151-174_175-198_199-222_223-246_247-270_280-303_305-329_357-378+|IPR032675+24-125_126-275_276-445+|IPR050328+283-530+
|
SM00082+389-440+|SM00365+80-102_104-125_127-148_175-196_199-217_223-244+|SM00369+80-103_104-126_128-150_151-174_175-198_199-222_223-246_247-270_280-303_305-329_357-378+
|
PF13855+59-116_121-164_201-260_307-368+Leucine_rich_repeat
|
G3DSA:3.80.10.10:FF:001164+129-276+GH01279p
|
PTHR24373+283-530+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
548-678
|
1.000
|
1-547
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
75809.720
|
7.142
|
6.500
|
20.796
|
10.619
|
47.493
|
52.507
|
11.504
|
9.292
|
49.115
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
514.581
|
251.949
|
348.284
|
372.485
|
325.092
|
186.401
|
243.197
|
267.517
|
215.042
|
1341.912
|
858.968
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.238
|
0.427
|
0.205
|
-0.229
|
-0.786
|
0.390
|
— | — | — | — | — | — | — |