Hg_chrom1_TN10mRNA_770
Organism: Heterodera glycines Gene Locus: chr1:10971266-10975250 Feature type: polypeptideProtein Sequence
Length: 586
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.131 | 1.27 | 1.055 | 0.706 | 1.052 | 0.525 | 0.752 | 1.195 | 1.176 | 1.291 | 0.75 | 1.807 | 1.517 | 0.624 | 1.323 | 1.0 | 0.839 | 0.905 | 1.181 | 0.652 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_734
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.275
|
0.295
|
0.015
|
0.742
|
0.157
|
0.229
|
0.157
|
0.033
|
0.208
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000750
|
3.000
|
3.000
|
Hsc_gene_14971.t1;Hsc_gene_21531.t1;Hsc_gene_21531.t2
|
Hsc_gene_14971.t1;Hsc_gene_21531.t1;Hsc_gene_21531.t2
|
— |
P22781.1 Aromatic-L-amino-acid decarboxylase [Cavia porcellus]
|
KAI1717356.1 pyridoxal-dependent decarboxylase conserved domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006520|GO:0016830|GO:0016831|GO:0019752|GO:0030170
|
GO:0008150_0.863|GO:0003674_0.807|GO:0003824_0.691|GO:0008152_0.638|GO:0016829_0.596|GO:0009987_0.586|GO:0016830_0.586|GO:0016831_0.586|GO:0005575_0.569|GO:0110165_0.565|GO:0009058_0.513
|
IPR002129+37-175_247-491+|IPR010977+6-25_49-68_75-94_96-114_115-134_142-162+|IPR015421+84-456+|IPR015422+458-562+|IPR015424+1-550+
|
— |
PF00282+37-175_247-491+Pyridoxal-dependent_decarboxylase_conserved_domain
|
— |
PTHR11999+1-551+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
559-586
|
1.000
|
1-558
|
3k40_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
65500.830
|
6.846
|
3.000
|
25.939
|
11.604
|
45.563
|
54.437
|
13.823
|
12.116
|
50.683
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
737.045
|
35.662
|
76.284
|
1676.484
|
1473.487
|
149.232
|
73.160
|
80.698
|
137.900
|
1784.267
|
1078.681
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.865
|
5.418
|
4.566
|
-0.218
|
-3.288
|
-1.020
|
-0.994
|
— | — | — | — | — | — |
No JSON data available for plots.