Hg_chrom1_TN10mRNA_771
Organism: Heterodera glycines Gene Locus: chr1:10975730-10981394 Feature type: polypeptideProtein Sequence
Length: 593
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.902 | 1.098 | 0.981 | 0.872 | 1.124 | 1.211 | 0.743 | 1.433 | 1.387 | 1.208 | 0.945 | 2.48 | 1.265 | 1.07 | 1.101 | 0.602 | 0.94 | 0.562 | 1.557 | 0.645 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_735
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.782
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
41-62
|
0.975
|
16-38
|
0.999
|
— | — |
0.001
|
— | — |
0.278
|
0.348
|
0.063
|
0.679
|
0.240
|
0.150
|
0.356
|
0.060
|
0.346
|
0.197
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005728
|
1.000
|
1.000
|
Hsc_gene_14972.t1
|
Hsc_gene_14972.t1
|
— |
P48319.1 Glutamate decarboxylase 1 [Sus scrofa]
|
KHN81955.1 Glutamate decarboxylase 1 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016830|GO:0019752|GO:0030170
|
GO:0008150_0.829|GO:0003674_0.749|GO:0005575_0.749|GO:0110165_0.741|GO:0009987_0.722|GO:0008152_0.620|GO:0005622_0.619|GO:0003824_0.610|GO:0005737_0.548|GO:0044237_0.545|GO:0009058_0.541|GO:0016020_0.527|GO:0016829_0.511|GO:0016830_0.503|GO:0016831_0.503
|
IPR002129+147-516+|IPR015421+211-459+|IPR015424+112-592+
|
— |
PF00282+147-516+Pyridoxal-dependent_decarboxylase_conserved_domain
|
G3DSA:3.40.640.10:FF:000016+211-459+Glutamate_decarboxylase_like_1
|
PTHR45677+107-592+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-110
|
1.000
|
111-593
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
67441.580
|
7.051
|
5.500
|
26.644
|
11.636
|
46.037
|
53.963
|
14.503
|
12.142
|
45.868
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1481.235
|
1144.869
|
4569.537
|
2027.870
|
2304.997
|
567.105
|
649.399
|
3203.216
|
434.312
|
729.549
|
603.019
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.770
|
0.687
|
-1.065
|
0.153
|
-2.007
|
— |
2.398
|
-2.163
|
— | — | — | — | — |
No JSON data available for plots.