Hg_chrom1_TN10mRNA_774
Organism: Heterodera glycines Gene Locus: chr1:10986119-10988892 Feature type: polypeptideProtein Sequence
Length: 393
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 1.42 | 0.879 | 0.526 | 1.06 | 0.913 | 0.576 | 1.272 | 0.961 | 1.479 | 1.118 | 1.347 | 1.414 | 0.979 | 0.987 | 0.945 | 1.126 | 1.002 | 0.587 | 0.823 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_738
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
QLQKP
|
— | — |
19-41
|
0.799
|
— | — |
0.000
|
— | — |
0.471
|
0.340
|
0.032
|
0.632
|
0.114
|
0.139
|
0.157
|
0.042
|
0.203
|
0.194
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005730
|
1.000
|
1.000
|
Hsc_gene_14975.t1
|
Hsc_gene_14975.t1
|
— |
Q9Y2F9.1 BTB/POZ domain-containing protein 3 [Homo sapiens]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.760|GO:0110165_0.744|GO:0008150_0.705|GO:0005622_0.668|GO:0009987_0.584|GO:0005737_0.582
|
IPR000210+91-206_100-180_100-211+|IPR011333+64-237_82-206+|IPR011705+215-325_217-322+
|
SM00225+100-211+|SM00875+215-325+
|
PF00651+91-206+BTB/POZ_domain|PF07707+217-322+BTB_And_C-terminal_Kelch
|
— |
PTHR45774+61-369+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-89
|
1.000
|
90-393
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
44352.850
|
8.453
|
9.000
|
25.954
|
11.196
|
49.109
|
50.891
|
14.758
|
11.196
|
49.109
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
876.835
|
726.956
|
741.305
|
600.186
|
479.655
|
473.626
|
344.893
|
1351.461
|
204.248
|
1913.687
|
1181.070
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.201
|
-0.414
|
-0.197
|
-0.357
|
— |
-0.449
|
1.410
|
-1.829
|
-3.351
|
— | — | — | — |
No JSON data available for plots.