Hg_chrom1_TN10mRNA_776
Organism: Heterodera glycines Gene Locus: chr1:10995931-10996986 Feature type: polypeptideProtein Sequence
Length: 185
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.074 | 0.88 | 1.572 | 0.0 | 1.622 | 0.416 | 0.965 | 0.0 | 0.24 | 0.73 | 2.785 | 2.544 | 0.45 | 0.832 | 0.11 | 0.695 | 0.532 | 0.901 | 0.416 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_740
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_14990;Hsc_gene_25688;Hsc_gene_24982
|
— | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
AKKENKKGAVATSAKGKAAPKGAAKGGIKKDAKSKGKGKKDAKGKKDKKAKPAKGKGVPKNDKKSPTAKANDKKSPTKPMA
|
— | — | — | — |
1-23
|
0.994
|
1.000
|
0.000
|
0.000
|
0.806
|
0.017
|
0.009
|
0.401
|
0.078
|
0.045
|
0.170
|
0.001
|
0.075
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000238
|
7.000
|
3.000
|
Hsc_gene_14977.t1;Hsc_gene_14990.t1;Hsc_gene_16080.t1
|
Hsc_gene_14998.t1;Hsc_gene_14998.t2
|
— | — |
QLK97585.1 secretory protein 32E03 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-185
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
19375.040
|
8.360
|
1.000
|
37.297
|
2.162
|
50.811
|
49.189
|
18.919
|
18.378
|
56.757
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
5787.030
|
11.177
|
10.928
|
968.384
|
914.401
|
101.104
|
125.837
|
41.283
|
990.825
|
23760.219
|
14001.907
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.301
|
6.589
|
— |
-3.163
|
— |
-1.414
|
1.758
|
-4.695
|
— |
-4.595
|
— | — |