Hg_chrom1_TN10mRNA_778
Organism: Heterodera glycines Gene Locus: chr1:11009276-11010707 Feature type: polypeptideProtein Sequence
Length: 230
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.91 | 1.416 | 0.711 | 1.949 | 1.159 | 0.446 | 0.518 | 0.652 | 1.643 | 0.94 | 1.647 | 1.023 | 0.966 | 0.753 | 0.976 | 0.932 | 0.855 | 0.659 | 1.338 | 1.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_742
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
KRNPGTGTLYCYDGINKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.312
|
0.264
|
0.017
|
0.221
|
0.090
|
0.038
|
0.075
|
0.033
|
0.501
|
0.719
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002869
|
2.000
|
1.000
|
Hsc_gene_15937.t1
|
— | — | — |
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
WP_341296226
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.928|GO:0005575_0.908|GO:0110165_0.906|GO:0003674_0.842|GO:0032501_0.764|GO:0032502_0.745|GO:0048856_0.745|GO:0007275_0.724|GO:0003824_0.702|GO:0016787_0.679|GO:0140096_0.672|GO:0018996_0.670|GO:0022404_0.670|GO:0040002_0.670|GO:0042303_0.670|GO:0042335_0.670|GO:0042395_0.670|GO:0008233_0.662|GO:0004175_0.657|GO:0004222_0.650|GO:0008237_0.650|GO:0005576_0.597
|
IPR035914+18-132+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-230
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
26278.440
|
8.868
|
12.500
|
27.826
|
11.739
|
47.391
|
52.609
|
16.957
|
10.870
|
47.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
102.452
|
1.744
|
1.588
|
1.180
|
6.625
|
15.115
|
7.999
|
18.897
|
0.514
|
427.911
|
244.741
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
2.456
|
1.199
|
-0.909
|
— |
-1.097
|
— | — | — | — | — |
No JSON data available for plots.