Hg_chrom1_TN10mRNA_779
Organism: Heterodera glycines Gene Locus: chr1:11012939-11018503 Feature type: polypeptideProtein Sequence
Length: 733
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.015 | 1.459 | 1.265 | 0.612 | 0.91 | 1.119 | 0.731 | 1.16 | 0.91 | 1.364 | 0.579 | 1.766 | 1.175 | 0.918 | 1.142 | 1.072 | 1.074 | 0.765 | 0.735 | 0.682 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_743
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.285
|
0.351
|
0.028
|
0.639
|
0.210
|
0.331
|
0.288
|
0.103
|
0.357
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000142
|
11.000
|
2.000
|
Hsc_gene_11567.t1;Hsc_gene_23079.t1
|
Hsc_gene_23079.t1
|
— |
Q20500.1 Intracellular phospholipase A2 [Caenorhabditis elegans]
|
KAI1725474.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006629|GO:0047499
|
GO:0008150_0.894|GO:0005575_0.742|GO:0110165_0.742|GO:0003674_0.741|GO:0009987_0.711|GO:0005622_0.632|GO:0050896_0.619|GO:0016020_0.591|GO:0065007_0.556|GO:0008152_0.551|GO:0044238_0.551|GO:0050789_0.538|GO:0050794_0.522
|
IPR002110+31-60_38-129_64-93_64-96_99-128_99-131_132-162+|IPR002641+304-480_304-483+|IPR016035+302-610+|IPR036770+6-169_30-158+|IPR047148+12-622+
|
SM00248+31-60_64-93_99-128_132-162+
|
PF01734+304-480+Patatin-like_phospholipase|PF12796+38-129+Ankyrin_repeats_(3_copies)
|
— |
PTHR24139+12-622+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
176-250;633-733
|
2.000
|
1-175;251-632
|
4zfh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
81186.370
|
5.169
|
-13.500
|
24.147
|
9.823
|
48.840
|
51.160
|
11.733
|
12.415
|
53.752
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
553.295
|
114.832
|
122.898
|
145.780
|
384.947
|
279.711
|
443.415
|
185.700
|
114.429
|
1705.862
|
1023.819
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.358
|
1.371
|
-0.447
|
0.676
|
-0.701
|
1.401
|
-4.011
|
— | — | — | — |
No JSON data available for plots.