Hg_chrom1_TN10mRNA_78
Organism: Heterodera glycines Gene Locus: chr1:521121-524352 Feature type: polypeptideProtein Sequence
Length: 229
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.609 | 1.117 | 1.112 | 0.151 | 1.31 | 1.344 | 1.144 | 0.655 | 1.067 | 0.649 | 0.595 | 2.055 | 1.092 | 1.344 | 1.604 | 0.998 | 1.074 | 1.059 | 0.0 | 0.899 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_74
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
PKRTNVPG,RGMRGGRGTGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.699
|
0.096
|
0.013
|
0.543
|
0.073
|
0.044
|
0.069
|
0.003
|
0.097
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000713
|
1.000
|
5.000
|
Hsc_gene_15960.t1;Hsc_gene_15960.t2;Hsc_gene_5373.t1;Hsc_gene_5631.t1;Hsc_gene_5631.t2
|
Hsc_gene_15960.t1;Hsc_gene_15960.t2
|
— |
Q7ZXB8.1 Polyadenylate-binding protein 2-B [Xenopus laevis]
|
KAI3411031.1 Polyadenylate-binding protein 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.851|GO:0110165_0.843|GO:0005622_0.781|GO:0003674_0.707|GO:0005488_0.664|GO:0043226_0.630|GO:0016020_0.629|GO:0043229_0.622|GO:0043227_0.580|GO:0043231_0.565|GO:0008150_0.558|GO:0005634_0.506|GO:0097159_0.501
|
IPR000504+95-172_96-168_97-166+|IPR012677+39-226+|IPR035979+79-195+
|
SM00360+96-168+
|
PF00076+97-166+RNA_recognition_motif
|
— |
PTHR23236+29-202+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-104;160-229
|
1.000
|
105-159
|
2m70_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
25389.320
|
5.173
|
-3.500
|
27.074
|
8.297
|
50.655
|
49.345
|
13.100
|
13.974
|
53.712
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
1703.974
|
1315.213
|
926.172
|
1755.568
|
1880.207
|
1621.980
|
1154.860
|
782.455
|
606.456
|
3461.373
|
2237.837
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.735
|
0.280
|
1.031
|
— | — |
-0.481
|
-1.156
|
0.703
|
-2.625
|
— | — | — | — |
No JSON data available for plots.