Hg_chrom1_TN10mRNA_780
Organism: Heterodera glycines Gene Locus: chr1:11049153-11051999 Feature type: polypeptideProtein Sequence
Length: 478
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.535 | 1.606 | 0.647 | 0.433 | 1.604 | 1.073 | 0.498 | 0.837 | 2.139 | 1.103 | 1.3 | 1.846 | 1.395 | 0.443 | 1.067 | 0.926 | 0.755 | 0.983 | 0.805 | 0.984 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_744
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KREKLTKMANIVTKRQDK
|
— | — | — | — |
1-20
|
0.999
|
1.000
|
0.000
|
0.000
|
0.489
|
0.261
|
0.013
|
0.436
|
0.213
|
0.124
|
0.161
|
0.009
|
0.248
|
0.298
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001684
|
1.000
|
3.000
|
Hsc_gene_14978.t1;Hsc_gene_17753.t1;Hsc_gene_17753.t2
|
Hsc_gene_14978.t1
|
— |
P17801.2 Putative receptor protein kinase ZmPK1 [Zea mays]
|
HXQ70726.1 protein kinase [Pyrinomonadaceae bacterium]
|
HEX5886381
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.791|GO:0005575_0.788|GO:0110165_0.784|GO:0016020_0.638|GO:0009987_0.613|GO:0005622_0.599
|
IPR000719+57-385_58-385_66-383+|IPR011009+66-394+
|
SM00220+57-385+
|
PF00069+66-383+Protein_kinase_domain
|
— |
PTHR44167+63-460+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-478
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
55548.120
|
8.205
|
7.000
|
28.661
|
11.088
|
50.837
|
49.163
|
15.481
|
13.180
|
40.377
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
657.252
|
4.500
|
177.857
|
292.491
|
143.029
|
15.296
|
16.200
|
27.793
|
1881.327
|
1210.544
|
1498.022
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.073
|
5.881
|
0.825
|
-1.063
|
-3.211
|
— | — | — | — |
-2.539
|
— | — | — |