SCN Proteipedia

Hg_chrom1_TN10mRNA_781

Organism: Heterodera glycines Gene Locus: chr1:11069407-11078785 Feature type: polypeptide

Protein Sequence

Length: 1,040

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.962	1.096	0.979	1.094	0.881	1.257	0.984	0.962	1.261	1.156	0.86	1.584	1.202	0.943	0.962	0.879	0.946	0.991	0.814	0.594	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_745	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-Not_Clustered	0.820

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.236	0.309	0.100	0.690	0.237	0.220	0.179	0.269	0.219	0.092

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005732	1.000	1.000	Hsc_gene_14980.t1	Hsc_gene_14980.t1;Hsc_gene_17758.t1;Hsc_gene_17758.t2	—	Q18164.2 Dihydropyrimidine dehydrogenase [NADP(+)] [Caenorhabditis elegans]	KAI1730538.1 lipase (class 2) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005737\|GO:0016491\|GO:0016627\|GO:0051536	GO:0003674_0.853\|GO:0003824_0.714\|GO:0008150_0.672\|GO:0005575_0.647\|GO:0016491_0.612\|GO:0110165_0.608\|GO:0005488_0.555\|GO:0016627_0.516\|GO:0008152_0.514	IPR005720+534-838+\|IPR009051+28-183+\|IPR013785+534-845+\|IPR017896+940-972_974-1004+\|IPR017900+983-994+\|IPR023753+194-497+\|IPR028261+60-169+\|IPR036188+185-317_332-533+	—	PF01180+534-838+Dihydroorotate_dehydrogenase\|PF07992+194-497+Pyridine_nucleotide-disulphide_oxidoreductase\|PF14691+60-169+Dihydroprymidine_dehydrogenase_domain_II,_4Fe-4S_cluster\|PF14697+942-1001+4Fe-4S_dicluster_domain	G3DSA:1.10.1060.10:FF:000007+27-185+Dihydropyrimidine_dehydrogenase_[NADP(+)]\|G3DSA:3.20.20.70:FF:000027+534-845+Dihydropyrimidine_dehydrogenase_[NADP(+)]\|G3DSA:3.30.70.20:FF:000023+911-1021+Dihydropyrimidine_dehydrogenase_[NADP(+)]\|G3DSA:3.50.50.60:FF:000056+184-318+Dihydropyrimidine_dehydrogenase_[NADP(+)]\|G3DSA:3.50.50.60:FF:000061+332-533+Dihydropyrimidine_dehydrogenase_[NADP(+)]	PTHR43073+6-1016+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2	1.000	3-1040	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.736	113923.430	7.057	7.000	22.981	9.327	44.519	55.481	12.308	10.673	53.173

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	turquoise	1124.387	729.644	1149.074	1113.630	1719.966	1716.967	1157.339	2981.478	208.981	799.420	546.375

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.427	0.473	—	0.596	—	-0.560	0.691	-1.224	—	—	—	—	—

No JSON data available for plots.

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