Hg_chrom1_TN10mRNA_782
Organism: Heterodera glycines Gene Locus: chr1:11108616-11114264 Feature type: polypeptideProtein Sequence
Length: 998
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 1.561 | 1.13 | 1.624 | 1.086 | 0.745 | 0.74 | 0.852 | 1.314 | 1.029 | 1.397 | 1.238 | 1.364 | 1.06 | 0.92 | 0.845 | 0.903 | 0.607 | 1.079 | 0.796 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_746
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-16
|
0.992
|
0.999
|
0.000
|
0.000
|
0.287
|
0.186
|
0.049
|
0.293
|
0.115
|
0.105
|
0.119
|
0.018
|
0.300
|
0.655
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000233
|
6.000
|
4.000
|
Hsc_gene_22581.t1;Hsc_gene_22632.t1;Hsc_gene_24320.t1;Hsc_gene_24321.t1
|
Hsc_gene_14739.t1
|
— |
Q18206.2 Zinc metalloproteinase nas-36 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.806|GO:0032501_0.621|GO:0005575_0.573|GO:0110165_0.572
|
IPR000742+793-804+|IPR001506+566-769_597-769_602-620_666-684_685-702_716-731_755-768+|IPR006026+560-721+|IPR024079+520-771+|IPR035914+841-946+
|
SM00235+560-721+
|
PF01400+597-769+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+534-902+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-998
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
112755.920
|
7.911
|
18.500
|
28.156
|
10.721
|
49.198
|
50.802
|
15.431
|
12.725
|
50.501
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkmagenta
|
626.412
|
2.137
|
4.928
|
2.757
|
59.346
|
66.810
|
9.626
|
138.726
|
627.564
|
2163.258
|
1505.103
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
4.400
|
— |
-2.786
|
0.947
|
-3.705
|
— |
-7.688
|
-2.803
|
-4.279
|
— |