Hg_chrom1_TN10mRNA_786
Organism: Heterodera glycines Gene Locus: chr1:11364197-11366722 Feature type: polypeptideProtein Sequence
Length: 313
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.966 | 1.932 | 0.929 | 0.11 | 1.544 | 0.492 | 0.609 | 0.319 | 1.065 | 0.518 | 1.694 | 2.067 | 0.355 | 0.123 | 0.326 | 1.278 | 2.252 | 1.501 | 0.246 | 0.376 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_750
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-23
|
0.944
|
0.999
|
0.000
|
0.000
|
0.687
|
0.216
|
0.058
|
0.311
|
0.108
|
0.037
|
0.075
|
0.005
|
0.123
|
0.578
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005734
|
1.000
|
1.000
|
Hsc_gene_14981.t1
|
Hsc_gene_14981.t1
|
— | — |
XP_065304289.1 histone H1-delta-like [Dermacentor albipictus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0006334
|
GO:0005575_0.931|GO:0110165_0.928|GO:0005622_0.840|GO:0003674_0.809|GO:0043226_0.797|GO:0005488_0.786|GO:0043229_0.769|GO:0016020_0.647|GO:0097159_0.632|GO:0003676_0.618|GO:0008150_0.616|GO:0003677_0.600|GO:0043228_0.590|GO:0043232_0.590|GO:0009987_0.558|GO:0043227_0.550|GO:0043231_0.517
|
IPR005818+215-283_217-293_220-286_224-286+|IPR036388+218-292+|IPR036390+214-288+
|
SM00526+215-283+
|
PF00538+220-286+linker_histone_H1_and_H5_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-228
|
1.000
|
229-313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
33723.700
|
5.173
|
-4.000
|
27.796
|
3.514
|
60.703
|
39.297
|
13.419
|
14.377
|
60.383
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
660.543
|
28.826
|
94.283
|
16.169
|
39.765
|
999.794
|
9.944
|
5325.795
|
1.028
|
446.140
|
255.378
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.478
|
-0.972
|
-2.436
|
1.269
|
4.664
|
-6.636
|
2.315
|
-8.920
|
-8.558
|
3.876
|
— | — | — |