Hg_chrom1_TN10mRNA_792
Organism: Heterodera glycines Gene Locus: chr1:11385472-11386910 Feature type: polypeptideProtein Sequence
Length: 174
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.005 | 1.069 | 1.463 | 0.198 | 1.149 | 0.295 | 0.889 | 0.287 | 0.511 | 1.087 | 3.048 | 1.352 | 0.479 | 0.774 | 0.117 | 0.493 | 0.565 | 1.045 | 0.0 | 0.169 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_756
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_24982
|
— |
Hg_chrom1_TN10mRNA_792
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
NKKGAITTPAKGKAAPKGAAKGGIKKDAKSKGKGKKDAKGKKDKKAKPAKGKGVPKNDKKSPAAKANDKKNLTKP
|
— | — | — | — |
1-23
|
0.996
|
1.000
|
0.000
|
0.000
|
0.680
|
0.032
|
0.013
|
0.475
|
0.070
|
0.081
|
0.153
|
0.001
|
0.075
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000238
|
7.000
|
3.000
|
Hsc_gene_14977.t1;Hsc_gene_14990.t1;Hsc_gene_16080.t1
|
Hsc_gene_14989.t1;Hsc_gene_14998.t1;Hsc_gene_14998.t2;Hsc_gene_15006.t1;Hsc_gene_24982.t1
|
— | — |
QPO14717.1 effector protein 32E03, partial [Heterodera glycines]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-174
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
18269.190
|
10.231
|
10.500
|
36.207
|
2.874
|
48.851
|
51.149
|
21.264
|
14.943
|
55.747
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
224.695
|
0.915
|
3.022
|
96.836
|
61.977
|
7.552
|
9.431
|
4.978
|
176.220
|
781.607
|
522.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.584
|
5.122
|
-0.677
|
-3.024
|
— | — | — | — | — |
-3.522
|
— | — |