Hg_chrom1_TN10mRNA_793
Organism: Heterodera glycines Gene Locus: chr1:11396937-11397261 Feature type: polypeptideProtein Sequence
Length: 77
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.208 | 1.208 | 0.236 | 0.448 | 0.216 | 0.999 | 2.628 | 0.0 | 0.866 | 0.878 | 0.394 | 0.764 | 1.443 | 1.249 | 0.53 | 1.299 | 0.426 | 0.59 | 1.998 | 2.292 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_757
|
— | — |
1.889
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_14988;Hsc_gene_14999;Hsc_gene_15005;Hsc_gene_14986
|
Hg_chrom1_TN10mRNA_793
|
13-Not_described
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-28
|
0.997
|
1.000
|
0.000
|
0.000
|
0.295
|
0.309
|
0.079
|
0.241
|
0.227
|
0.071
|
0.131
|
0.009
|
0.118
|
0.910
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001685
|
2.000
|
2.000
|
Hsc_gene_15005.t1;Hsc_gene_15007.t1
|
Hsc_gene_14986.t1;Hsc_gene_14988.t1;Hsc_gene_14999.t1;Hsc_gene_15005.t1;Hsc_gene_15007.t1
|
— | — |
KAH7721293.1 hypothetical protein AAVH_11256 [Aphelenchus avenae]
|
WP_018632312
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
59-77
|
1.000
|
1-58
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.917
|
7884.800
|
8.857
|
2.000
|
7.792
|
15.584
|
28.571
|
71.429
|
5.195
|
2.597
|
62.338
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
salmon
|
249.803
|
280.760
|
312.738
|
58.050
|
168.806
|
147.114
|
7.709
|
350.090
|
4.820
|
592.299
|
340.522
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-2.411
|
-2.321
|
1.508
|
— |
-4.246
|
1.140
|
-5.361
|
-7.093
|
3.812
|
— | — | — |