SCN Proteipedia

Hg_chrom1_TN10mRNA_80

Organism: Heterodera glycines Gene Locus: chr1:535136-538899 Feature type: polypeptide

Protein Sequence

Length: 339

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.892	0.892	1.555	0.407	2.655	1.21	0.281	1.327	0.721	0.797	1.028	1.041	0.901	1.305	2.167	0.674	0.774	0.492	0.454	0.434	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_76	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRRK,PSVKRKR,KRKRMISN,RRKRHQKPTKR,KRFEDMELERRKRHQK,KRLLEHNKNWAIARINRK	—	—	—	—	—	—	0.000	—	—	0.954	0.055	0.014	0.177	0.018	0.014	0.019	0.002	0.015	0.009

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005569	1.000	1.000	Hsc_gene_15959.t1	Hsc_gene_15959.t1	—	—	KAF7629893.1 YL1_C domain-containing protein [Meloidogyne graminicola]	No	-0.250

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005634\|GO:0045815\|GO:0140849	GO:0005575_0.820\|GO:0008150_0.819\|GO:0110165_0.818\|GO:0005622_0.800\|GO:0043226_0.753\|GO:0043229_0.729\|GO:0016020_0.724\|GO:0043228_0.694\|GO:0043232_0.694\|GO:0005634_0.684\|GO:0043227_0.684\|GO:0043231_0.684\|GO:0009987_0.661\|GO:0032991_0.660\|GO:0065007_0.642\|GO:0050789_0.640\|GO:0050794_0.619\|GO:0003674_0.599\|GO:0008152_0.574\|GO:0043170_0.574\|GO:0009058_0.559\|GO:0009059_0.559\|GO:0010467_0.559\|GO:0044237_0.559\|GO:0044249_0.559\|GO:0019222_0.552\|GO:0060255_0.550\|GO:0016043_0.547\|GO:0071840_0.547\|GO:0031323_0.540\|GO:0009889_0.519\|GO:0010468_0.518\|GO:0010556_0.518\|GO:0031326_0.518	IPR008895+175-330+\|IPR013272+279-308_280-308+\|IPR046757+80-177_182-246+	SM00993+279-308+	PF05764+80-177_182-246+YL1_nuclear_protein\|PF08265+280-308+YL1_nuclear_protein_C-terminal_domain	—	PTHR13275+175-330+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-258;313-339	1.000	259-312	5chl_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.884	39820.730	4.691	-19.500	44.543	7.965	62.537	37.463	20.059	24.484	43.068

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	darkgrey	995.561	705.523	630.643	750.822	953.038	773.714	903.243	578.519	1090.112	1552.182	1354.152

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.392	—	0.361	0.312	-0.286	0.234	-0.524	0.785	—	—	—	—	—

No JSON data available for plots.

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