Hg_chrom1_TN10mRNA_803
Organism: Heterodera glycines Gene Locus: chr1:11439057-11440093 Feature type: polypeptideProtein Sequence
Length: 185
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.137 | 0.88 | 1.572 | 0.0 | 1.622 | 0.416 | 0.965 | 0.0 | 0.24 | 0.804 | 2.785 | 2.544 | 0.45 | 0.936 | 0.11 | 0.618 | 0.443 | 0.901 | 0.0 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_767
|
— | — |
1.667
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
3.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
Gland4|MT0123161#tn7jg26951t1
|
Hsc_gene_14990;Hsc_gene_15974;Hsc_gene_21100;Hsc_gene_25688;Hsc_gene_25898;Hsc_gene_3587;Hsc_gene_22900;Hsc_gene_22902;Hsc_gene_24982
|
— |
Hg_chrom1_TN10mRNA_803
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
AKKENKKGAVATPAKGKAAPKGAAKGGIKKDAKSKGKGKKDAKGKKDKKAKPAKGKGVPKNDKKSPAAKANDKKSPTKPMAA
|
— | — | — | — |
1-23
|
0.994
|
1.000
|
0.000
|
0.000
|
0.794
|
0.017
|
0.008
|
0.403
|
0.075
|
0.048
|
0.167
|
0.001
|
0.083
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000238
|
7.000
|
3.000
|
Hsc_gene_14977.t1;Hsc_gene_14990.t1;Hsc_gene_16080.t1
|
Hsc_gene_14989.t1;Hsc_gene_14998.t1;Hsc_gene_14998.t2
|
— | — |
QLK97585.1 secretory protein 32E03 [Heterodera glycines]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-185
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
19282.000
|
8.360
|
1.000
|
37.297
|
1.622
|
49.730
|
50.270
|
18.919
|
18.378
|
56.757
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1825.919
|
5.205
|
9.596
|
750.314
|
533.668
|
52.194
|
69.270
|
30.332
|
374.537
|
7163.526
|
4253.959
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
7.035
|
6.393
|
-0.523
|
-3.339
|
— | — |
1.341
|
-4.366
|
— |
-3.632
|
— | — |