Hg_chrom1_TN10mRNA_804
Organism: Heterodera glycines Gene Locus: chr1:11440755-11449656 Feature type: polypeptideProtein Sequence
Length: 968
(Signal peptide: 1-15)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.613 | 1.49 | 1.258 | 0.392 | 1.274 | 0.768 | 0.775 | 1.033 | 1.125 | 1.284 | 1.049 | 1.702 | 1.607 | 0.914 | 0.822 | 0.945 | 0.813 | 0.892 | 0.874 | 1.033 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_768
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.803
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
cytoplasm|extracellular
|
nucleus
|
KRSR,KKCNNSDPGNNCDRRKVW
|
— | — | — | — |
1-15
|
0.916
|
0.717
|
0.000
|
0.000
|
0.227
|
0.213
|
0.031
|
0.539
|
0.248
|
0.337
|
0.330
|
0.038
|
0.330
|
0.648
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002977
|
1.000
|
2.000
|
Hsc_gene_15009.t1;Hsc_gene_15009.t2
|
Hsc_gene_15009.t1;Hsc_gene_15009.t2
|
— | — |
KAI3416186.1 hypothetical protein GPALN_005731 [Globodera pallida]
|
MCR4292452
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
— |
IPR001079+635-771_635-776_640-775_643-765_796-956+|IPR013320+643-766+|IPR044156+416-766+
|
SM00276+635-771+|SM00908+640-775+
|
PF00337+643-765+Galactoside-binding_lectin
|
— |
PTHR11346+416-766+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
326-400
|
2.000
|
1-325;401-968
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
109860.400
|
4.923
|
-25.000
|
27.583
|
12.500
|
48.554
|
51.446
|
13.017
|
14.566
|
48.450
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
383.088
|
89.962
|
229.497
|
67.081
|
45.914
|
540.139
|
161.566
|
654.809
|
47.048
|
969.861
|
574.370
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.122
|
-0.561
|
-1.667
|
-0.583
|
3.575
|
-1.733
|
— |
-1.876
|
-4.500
|
— |
-4.118
|
— | — |