Hg_chrom1_TN10mRNA_81
Organism: Heterodera glycines Gene Locus: chr1:541487-543008 Feature type: polypeptideProtein Sequence
Length: 228
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.071 | 1.53 | 1.116 | 1.512 | 1.17 | 1.125 | 0.835 | 1.316 | 0.682 | 0.593 | 1.196 | 1.548 | 0.853 | 0.675 | 1.611 | 1.065 | 0.647 | 0.997 | 1.35 | 0.129 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_77
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.691
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KGKKRHRN
|
— | — | — | — | — |
0.504
|
0.005
|
0.000
|
— |
0.961
|
0.086
|
0.108
|
0.240
|
0.018
|
0.013
|
0.021
|
0.012
|
0.054
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005570
|
1.000
|
1.000
|
Hsc_gene_15958.t1
|
— | — | — |
KAI1699595.1 tc5 transposase DNA-binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.892|GO:0110165_0.884|GO:0005622_0.829|GO:0016020_0.788|GO:0043226_0.788|GO:0043229_0.780|GO:0043227_0.723|GO:0043231_0.719|GO:0005634_0.667|GO:0031974_0.615|GO:0043233_0.614|GO:0070013_0.612|GO:0031981_0.606|GO:0005654_0.575
|
IPR006600+147-215_153-215_157-214+|IPR009057+152-210+
|
SM00674+153-215+
|
PF03221+157-214+Tc5_transposase_DNA-binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
57-228
|
1.000
|
1-56
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
25369.520
|
8.505
|
9.000
|
31.579
|
7.895
|
53.947
|
46.053
|
18.421
|
13.158
|
54.825
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
629.752
|
360.968
|
320.772
|
325.747
|
284.993
|
197.209
|
378.983
|
413.779
|
581.000
|
1463.498
|
1085.284
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.400
|
-0.285
|
— |
-0.224
|
-0.517
|
0.952
|
0.969
|
— | — | — | — | — | — |