Hg_chrom1_TN10mRNA_810
Organism: Heterodera glycines Gene Locus: chr1:11478493-11481471 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.61 | 1.077 | 1.178 | 0.851 | 1.595 | 1.583 | 0.514 | 1.08 | 1.235 | 1.21 | 1.029 | 1.816 | 2.315 | 0.356 | 1.008 | 0.794 | 1.063 | 0.608 | 0.95 | 0.635 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_774
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKAILERISELENRQKEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.554
|
0.103
|
0.008
|
0.573
|
0.294
|
0.164
|
0.062
|
0.032
|
0.065
|
0.266
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002979
|
1.000
|
2.000
|
Hsc_gene_15017.t1;Hsc_gene_15017.t2
|
— | — |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
KAI3415369.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
KAI1418586
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.739|GO:0005575_0.560|GO:0110165_0.557|GO:0005622_0.506
|
IPR001870+121-317+|IPR003877+192-316_208-314+|IPR013320+137-317+|IPR043136+114-322+|IPR044736+175-313+|IPR050618+88-313+
|
SM00449+192-316+
|
PF00622+208-314+SPRY_domain
|
— |
PTHR12864+88-313+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-324
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
37875.930
|
4.829
|
-10.500
|
29.938
|
13.889
|
52.778
|
47.222
|
13.889
|
16.049
|
41.049
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
96.028
|
8.612
|
10.204
|
7.044
|
9.329
|
10.969
|
111.692
|
8.782
|
23.496
|
340.011
|
204.362
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.352
|
— |
3.808
|
— | — | — | — | — |
No JSON data available for plots.