Hg_chrom1_TN10mRNA_811
Organism: Heterodera glycines Gene Locus: chr1:11482548-11483334 Feature type: polypeptideProtein Sequence
Length: 153
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.52 | 1.064 | 1.545 | 0.0 | 2.288 | 1.006 | 0.778 | 0.0 | 0.436 | 0.707 | 2.476 | 2.307 | 0.182 | 1.006 | 0.534 | 0.654 | 0.643 | 0.693 | 0.503 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_775
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_14990;Hsc_gene_15008
|
— | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKVGIGIISGKKLQRK,GKKLQRKEELKKTQNQREKEKRTPKAKRTKKAKPAKGKGVPKNDNKSPAAKANDKKSPTKPMA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.848
|
0.035
|
0.039
|
0.319
|
0.049
|
0.032
|
0.111
|
0.002
|
0.039
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000752
|
1.000
|
5.000
|
Hsc_gene_14989.t1;Hsc_gene_14998.t1;Hsc_gene_14998.t2;Hsc_gene_15006.t1;Hsc_gene_17748.t1
|
Hsc_gene_14989.t1;Hsc_gene_14998.t1;Hsc_gene_14998.t2;Hsc_gene_15008.t1
|
— | — |
QPO14717.1 effector protein 32E03, partial [Heterodera glycines]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-153
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
16666.640
|
4.800
|
-5.000
|
41.176
|
1.307
|
58.170
|
41.830
|
18.954
|
22.222
|
50.980
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
991.768
|
7.668
|
7.562
|
944.353
|
556.497
|
54.500
|
71.451
|
37.625
|
332.400
|
3459.814
|
2119.494
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.810
|
7.056
|
-0.794
|
-3.338
|
— | — |
1.076
|
— | — |
-2.508
|
— | — |
No JSON data available for plots.