Hg_chrom1_TN10mRNA_812
Organism: Heterodera glycines Gene Locus: chr1:11489662-11490302 Feature type: polypeptideProtein Sequence
Length: 139
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.586 | 1.171 | 0.916 | 0.496 | 0.48 | 1.291 | 1.028 | 1.079 | 2.078 | 0.972 | 1.308 | 1.27 | 2.598 | 0.277 | 1.028 | 1.233 | 0.708 | 0.763 | 0.0 | 1.058 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_776
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_15022
|
— | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRHLFLGFADKQQKK
|
19-44
|
0.977
|
— | — | — | — |
0.000
|
— | — |
0.476
|
0.315
|
0.067
|
0.582
|
0.269
|
0.355
|
0.117
|
0.062
|
0.225
|
0.306
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002980
|
2.000
|
1.000
|
Hsc_gene_15022.t1
|
Hsc_gene_15022.t1
|
— |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
KAI3419176.1 Ran-binding protein 9 [Globodera pallida]
|
PRP83909
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.903|GO:0003674_0.818|GO:0032502_0.709|GO:0048856_0.709|GO:0003824_0.692|GO:0009653_0.678|GO:0048646_0.675|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0051703_0.670|GO:0099120_0.670|GO:0016740_0.666|GO:0140096_0.660|GO:0016772_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650|GO:0016301_0.650|GO:0016773_0.650
|
IPR001870+1-139+|IPR003877+50-137+|IPR013320+12-136+|IPR043136+3-139+
|
— |
PF00622+50-137+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-139
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
15732.170
|
10.174
|
9.500
|
23.741
|
15.108
|
46.763
|
53.237
|
15.827
|
7.914
|
44.604
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
107.481
|
0.074
|
0.948
|
0.567
|
0.549
|
1.236
|
0.000
|
0.000
|
7.420
|
463.398
|
267.979
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — |
-7.024
|
— | — |
No JSON data available for plots.