Hg_chrom1_TN10mRNA_813
Organism: Heterodera glycines Gene Locus: chr1:11511336-11514018 Feature type: polypeptideProtein Sequence
Length: 481
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.338 | 1.499 | 0.718 | 0.574 | 2.426 | 3.518 | 0.495 | 1.351 | 1.34 | 0.871 | 1.764 | 1.712 | 0.866 | 0.56 | 0.933 | 0.386 | 0.648 | 0.693 | 0.32 | 0.183 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_777
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRKRRKKR,KKMVKMFSKKKDKMK,KKVLTELVKLVLEEKRKNK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.259
|
0.091
|
0.057
|
0.415
|
0.339
|
0.238
|
0.227
|
0.022
|
0.431
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001688
|
2.000
|
2.000
|
Hsc_gene_15032.t1;Hsc_gene_15032.t2
|
Hsc_gene_15032.t1;Hsc_gene_15032.t2
|
— |
Q9FKX5.1 NEP1-interacting protein-like 1 [Arabidopsis thaliana]
|
KAH9769509.1 RING-type domain-containing protein [Citrus sinensis]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.915|GO:0003674_0.739|GO:0005575_0.624|GO:0110165_0.624|GO:0008152_0.602|GO:0043170_0.602|GO:0003824_0.586|GO:0140096_0.586|GO:0016740_0.573|GO:0016746_0.573|GO:0016755_0.573|GO:0019787_0.573|GO:0004842_0.569|GO:0019538_0.568|GO:0044238_0.568|GO:0036211_0.521|GO:0043412_0.521|GO:0009987_0.519|GO:0016020_0.514|GO:0043687_0.502|GO:0070647_0.502
|
IPR001841+241-284_242-283_242-284+|IPR013083+207-288+
|
SM00184+242-283+
|
PF13639+241-284+Ring_finger_domain
|
— |
PTHR46539+172-434+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
289-481
|
1.000
|
1-288
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
56884.020
|
5.980
|
-4.500
|
37.422
|
6.861
|
64.241
|
35.759
|
18.919
|
18.503
|
33.264
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
725.631
|
3.663
|
8.263
|
86.422
|
85.454
|
21.361
|
16.218
|
13.194
|
461.491
|
2740.551
|
1763.811
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.421
|
3.497
|
— |
-1.987
|
— | — | — | — | — |
-4.922
|
— | — |
No JSON data available for plots.