Hg_chrom1_TN10mRNA_816
Organism: Heterodera glycines Gene Locus: chr1:11537009-11539040 Feature type: polypeptideProtein Sequence
Length: 494
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.036 | 0.847 | 0.698 | 1.08 | 0.727 | 0.506 | 1.012 | 1.305 | 1.258 | 1.043 | 1.905 | 1.406 | 0.934 | 1.115 | 1.533 | 0.697 | 0.951 | 1.09 | 0.655 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_780
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKSIRKIRK,KKLSIDVLLEKIKKSIRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.711
|
0.130
|
0.042
|
0.349
|
0.267
|
0.120
|
0.091
|
0.065
|
0.093
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001064
|
1.000
|
4.000
|
Hsc_gene_13385.t1;Hsc_gene_22680.t1;Hsc_gene_2763.t1;Hsc_gene_5599.t1
|
— | — | — |
KIH53449.1 dimerization domain protein, hAT family [Ancylostoma duodenale]
|
No
|
-0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.913|GO:0110165_0.913|GO:0005622_0.854|GO:0016020_0.831|GO:0043226_0.810|GO:0043229_0.799|GO:0043227_0.766|GO:0005737_0.762|GO:0043231_0.742|GO:0005634_0.632|GO:0043228_0.622|GO:0043232_0.622|GO:0031974_0.577|GO:0043233_0.577|GO:0070013_0.577|GO:0031981_0.574|GO:0005856_0.572|GO:0005654_0.566|GO:0015630_0.557|GO:0005815_0.550|GO:0005814_0.547|GO:0005813_0.546|GO:0034451_0.540
|
IPR012337+93-453+|IPR052035+28-339+
|
— | — | — |
PTHR46481+28-339+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-494
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
55483.870
|
8.465
|
11.000
|
25.506
|
10.729
|
47.773
|
52.227
|
14.372
|
11.134
|
49.190
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
34.606
|
1.376
|
1.497
|
0.368
|
1.654
|
0.257
|
1.016
|
1.508
|
0.000
|
148.524
|
84.871
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.