Hg_chrom1_TN10mRNA_82
Organism: Heterodera glycines Gene Locus: chr1:543976-550448 Feature type: polypeptideProtein Sequence
Length: 569
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.757 | 1.104 | 0.415 | 0.242 | 0.469 | 3.064 | 1.255 | 3.251 | 0.351 | 1.14 | 0.399 | 1.241 | 0.732 | 0.71 | 0.538 | 1.381 | 0.864 | 0.825 | 0.0 | 0.362 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_78
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.463
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.685
|
0.169
|
0.013
|
0.405
|
0.134
|
0.065
|
0.058
|
0.024
|
0.077
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005571
|
1.000
|
1.000
|
Hsc_gene_15957.t1
|
Hsc_gene_15957.t1
|
— |
Q9W6I1.1 RNA-binding protein with multiple splicing 2 [Gallus gallus]
|
KAF7629894.1 Mec-8 protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.907|GO:0009987_0.812|GO:0065007_0.758|GO:0050789_0.747|GO:0050794_0.741|GO:0005575_0.634|GO:0110165_0.634|GO:0005622_0.540|GO:0003674_0.528|GO:0005488_0.502
|
IPR000504+38-139_39-135_93-125_412-500_413-485_414-479+|IPR012677+32-143_405-507+|IPR035979+37-482+
|
SM00360+39-135_413-485+
|
PF00076+93-125_414-479+RNA_recognition_motif
|
G3DSA:3.30.70.330:FF:000037+34-149+RNA-binding_protein_with_multiple_splicing_2
|
PTHR10501+305-501+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
74-261;326-422;488-569
|
3.000
|
1-73;262-325;423-487
|
5tkz_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.873
|
58971.090
|
8.072
|
19.500
|
16.872
|
10.369
|
48.506
|
51.494
|
11.775
|
5.097
|
57.469
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1795.584
|
2160.501
|
1613.362
|
2337.146
|
1400.769
|
745.347
|
1245.202
|
1543.895
|
831.597
|
3089.651
|
2121.913
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.650
|
— |
0.643
|
-0.770
|
-0.895
|
0.750
|
0.943
|
— | — | — | — | — | — |
No JSON data available for plots.