Hg_chrom1_TN10mRNA_822
Organism: Heterodera glycines Gene Locus: chr1:11569236-11571618 Feature type: polypeptideProtein Sequence
Length: 356
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.209 | 1.698 | 0.766 | 0.678 | 1.077 | 0.864 | 0.936 | 1.124 | 0.999 | 1.025 | 0.936 | 1.322 | 1.092 | 0.648 | 0.86 | 1.083 | 0.783 | 0.936 | 1.296 | 1.157 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_786
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_15024
|
— |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
— |
80-100
|
0.997
|
— | — |
1-33
|
0.775
|
1.000
|
0.000
|
0.000
|
0.261
|
0.330
|
0.143
|
0.419
|
0.191
|
0.351
|
0.242
|
0.082
|
0.253
|
0.612
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005743
|
1.000
|
1.000
|
Hsc_gene_15024.t1
|
Hsc_gene_15024.t1;Hsc_gene_15024.t2
|
— |
O45734.1 Cathepsin L-like [Caenorhabditis elegans]
|
CAA70694.1 cathepsin S-like cysteine proteinase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0008150_0.847|GO:0005575_0.813|GO:0110165_0.813|GO:0003674_0.620|GO:0009987_0.599|GO:0016020_0.570|GO:0005622_0.567|GO:0008152_0.558|GO:0005737_0.546|GO:0043226_0.528|GO:0003824_0.506
|
IPR000169+156-167+|IPR000668+138-355_156-171_302-312_318-324+|IPR013128+66-348+|IPR025660+300-310+|IPR025661+318-337+|IPR038765+65-355+|IPR039417+139-354+
|
SM00645+138-355+
|
PF00112+138-355+Papain_family_cysteine_protease
|
G3DSA:3.90.70.10:FF:000006+45-356+Cathepsin_S
|
PTHR12411+66-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-356
|
8iui_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
39221.210
|
7.116
|
3.000
|
23.315
|
11.798
|
46.348
|
53.652
|
12.640
|
10.674
|
53.652
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
4808.959
|
22.565
|
372.323
|
20600.220
|
7343.486
|
4328.281
|
4799.670
|
713.194
|
580.848
|
6286.156
|
3841.024
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.814
|
9.698
|
5.899
|
-1.520
|
-0.748
|
— |
-2.719
|
2.898
|
-3.561
|
— | — | — | — |