Hg_chrom1_TN10mRNA_823
Organism: Heterodera glycines Gene Locus: chr1:11572425-11575876 Feature type: polypeptideProtein Sequence
Length: 596
(Signal peptide: 1-15)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.858 | 1.132 | 1.037 | 0.405 | 0.755 | 1.506 | 0.459 | 0.923 | 1.268 | 1.27 | 0.788 | 2.171 | 1.258 | 0.742 | 1.198 | 0.959 | 1.265 | 0.89 | 1.807 | 1.135 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_787
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.926
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-15
|
0.767
|
0.980
|
4.000
|
4.000
|
0.062
|
0.094
|
0.023
|
0.148
|
0.161
|
0.129
|
0.218
|
0.040
|
0.813
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005744
|
1.000
|
1.000
|
Hsc_gene_15025.t1
|
Hsc_gene_15025.t1
|
— |
Q09453.2 Glycine receptor subunit beta-type 4 [Caenorhabditis elegans]
|
KAI1709452.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.971|GO:0009987_0.945|GO:0005575_0.901|GO:0110165_0.901|GO:0016020_0.881|GO:0051179_0.852|GO:0006810_0.848|GO:0051234_0.848|GO:0003674_0.833|GO:0071944_0.811|GO:0005886_0.802|GO:0055085_0.798|GO:0065007_0.793|GO:0050789_0.772|GO:0006811_0.771|GO:0034220_0.771|GO:0005215_0.723|GO:0022857_0.723|GO:0050794_0.722|GO:0023052_0.711|GO:0007154_0.710|GO:0015075_0.709|GO:0005216_0.704|GO:0015267_0.704|GO:0022803_0.704|GO:0050896_0.685|GO:0051716_0.673|GO:0022836_0.672|GO:0032501_0.656|GO:0030054_0.654|GO:0007267_0.635|GO:0015276_0.635|GO:0022834_0.635|GO:0007165_0.624|GO:0045202_0.623|GO:0098660_0.623|GO:0098916_0.620|GO:0099536_0.620|GO:0099537_0.620|GO:0007268_0.619|GO:0065008_0.615|GO:0005230_0.600|GO:0006820_0.571|GO:0006821_0.569|GO:0015698_0.569|GO:0098656_0.564|GO:0042391_0.562|GO:0015318_0.555|GO:0003008_0.547|GO:0098661_0.539|GO:1902476_0.538|GO:0008509_0.529|GO:0005253_0.514|GO:0050877_0.509|GO:0007166_0.508
|
IPR006028+254-274_280-301_314-335_572-592+|IPR006029+258-338+|IPR006201+32-339_47-459_90-106_122-133_168-182_245-257+|IPR006202+50-221+|IPR018000+168-182+|IPR036719+251-594+|IPR036734+38-248_52-250+|IPR038050+249-370_526-596+
|
— |
PF02931+50-221+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+258-338+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:2.70.170.10:FF:000039+39-248+Ligand-Gated_ion_Channel
|
PTHR18945+47-459+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
406-508
|
2.000
|
1-405;509-596
|
7mlv_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
68562.550
|
8.497
|
10.500
|
23.154
|
12.584
|
48.322
|
51.678
|
12.919
|
10.235
|
47.148
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
greenyellow
|
360.073
|
91.534
|
235.355
|
182.750
|
49.277
|
251.391
|
253.025
|
179.399
|
361.294
|
838.325
|
633.883
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.134
|
0.860
|
-0.257
|
-1.924
|
2.365
|
— |
-0.589
|
0.638
|
— | — |
-3.676
|
— | — |