Hg_chrom1_TN10mRNA_828
Organism: Heterodera glycines Gene Locus: chr1:11598948-11605045 Feature type: polypeptideProtein Sequence
Length: 712
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.143 | 1.502 | 1.353 | 0.339 | 1.311 | 1.188 | 0.368 | 0.562 | 1.717 | 1.348 | 1.596 | 2.148 | 0.936 | 0.486 | 0.831 | 0.903 | 0.484 | 0.83 | 0.324 | 0.454 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_792
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_15030
|
— |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RGTKRRG,KVKPKTKNAQNELKKQKSKGNKRNGKEK
|
— | — | — | — |
1-18
|
0.998
|
1.000
|
0.000
|
0.000
|
0.309
|
0.226
|
0.007
|
0.669
|
0.243
|
0.087
|
0.096
|
0.023
|
0.300
|
0.303
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_15029.t1
|
— |
Q8MNV0.2 Spastin homolog [Caenorhabditis elegans]
|
KAI1719325.1 ATPase family associated with various cellular activities (AAA) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005524|GO:0016887
|
GO:0008150_0.894|GO:0005575_0.877|GO:0110165_0.876|GO:0009987_0.842|GO:0005622_0.816|GO:0043226_0.703|GO:0043229_0.691|GO:0071840_0.686|GO:0016043_0.669|GO:0016020_0.620|GO:0006996_0.619|GO:0005737_0.590|GO:0003674_0.584|GO:0065007_0.507|GO:0043227_0.501
|
IPR000225+91-134_209-252+|IPR003593+465-595+|IPR003959+469-592+|IPR011989+46-173_174-421+|IPR016024+55-398+|IPR027417+431-689_440-691+|IPR050304+143-691+
|
SM00185+91-134_209-252+|SM00382+465-595+
|
PF00004+469-592+ATPase_family_associated_with_various_cellular_activities_(AAA)
|
— |
PTHR23074+143-691+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
652-712
|
1.000
|
1-651
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.503
|
80228.420
|
6.361
|
-1.000
|
31.039
|
6.461
|
51.404
|
48.596
|
15.730
|
15.309
|
45.084
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
187.118
|
4.873
|
223.993
|
444.932
|
191.394
|
22.635
|
28.405
|
24.444
|
501.361
|
89.865
|
266.221
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.294
|
6.378
|
1.099
|
-1.247
|
-3.067
|
— | — | — | — | — | — | — | — |