SCN Proteipedia

Hg_chrom1_TN10mRNA_83

Organism: Heterodera glycines Gene Locus: chr1:564474-574941 Feature type: polypeptide

Protein Sequence

Length: 1,022

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.024	0.751	1.121	0.641	0.881	1.781	1.013	1.321	0.826	1.164	0.712	1.612	1.223	0.941	1.118	1.034	1.155	0.771	0.677	0.518	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_79	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	FKRR,KRRP,RGMKRQR,RKVGGHDSGRYYAMKVLKK	—	—	—	—	—	—	0.000	—	—	0.698	0.220	0.009	0.728	0.098	0.080	0.079	0.010	0.246	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005572	1.000	1.000	Hsc_gene_15956.t1	Hsc_gene_15956.t1	—	Q18846.2 Putative ribosomal protein S6 kinase alpha-2 [Caenorhabditis elegans]	KAI1714084.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.936\|GO:0009987_0.907\|GO:0065007_0.880\|GO:0050789_0.873\|GO:0005575_0.849\|GO:0110165_0.849\|GO:0050794_0.845\|GO:0003674_0.788\|GO:0050896_0.786\|GO:0005622_0.764\|GO:0051716_0.758\|GO:0003824_0.745\|GO:0016740_0.745\|GO:0140096_0.740\|GO:0007154_0.723\|GO:0016301_0.715\|GO:0016772_0.715\|GO:0023052_0.710\|GO:0007165_0.699\|GO:0016773_0.681\|GO:0004672_0.678\|GO:0048518_0.582\|GO:0004674_0.563\|GO:0016020_0.554\|GO:0005488_0.551\|GO:0008152_0.543\|GO:0043170_0.543\|GO:0043226_0.535\|GO:0044237_0.533\|GO:0032501_0.530\|GO:0016043_0.525\|GO:0048522_0.525\|GO:0071840_0.525\|GO:0005737_0.521\|GO:0048519_0.513\|GO:0044238_0.512\|GO:0032502_0.504\|GO:0019222_0.503\|GO:0031323_0.501	IPR000719+106-389_108-389_490-764_493-764+\|IPR000961+390-452_390-460+\|IPR008271+230-242_604-616+\|IPR011009+103-459_493-765+\|IPR017441+112-138_496-519+	SM00133+390-452+\|SM00220+106-389_490-764+	PF00069+108-389_493-764+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000109+191-408+Ribosomal_protein_S6_kinase\|G3DSA:1.10.510.10:FF:000157+532-826+Ribosomal_protein_S6_kinase\|G3DSA:3.30.200.20:FF:000686+87-192+Ribosomal_protein_S6_kinase	PTHR24351+54-456+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-73;760-1022	1.000	74-759	1vzo_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.670	111927.050	6.535	0.500	24.266	9.687	48.728	51.272	12.818	11.448	52.838

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	greenyellow	2630.467	2042.909	581.358	947.743	1349.916	1257.642	2224.390	2055.445	637.181	7108.130	4334.866

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.041	-1.245	0.812	0.480	—	0.831	—	—	-3.587	—	—	—	—

No JSON data available for plots.

Back to Browser