Hg_chrom1_TN10mRNA_830
Organism: Heterodera glycines Gene Locus: chr1:11616700-11619474 Feature type: polypeptideProtein Sequence
Length: 479
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.364 | 1.554 | 0.759 | 0.504 | 2.436 | 3.64 | 0.522 | 1.461 | 1.392 | 0.846 | 1.708 | 1.596 | 0.928 | 0.482 | 0.895 | 0.447 | 0.513 | 0.664 | 0.321 | 0.184 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_794
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRKRRKKR,KKMVKMFSKNKDKMK,KKVLTELVKLVLEEKRKNK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.234
|
0.134
|
0.051
|
0.398
|
0.388
|
0.237
|
0.269
|
0.017
|
0.420
|
0.194
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001688
|
2.000
|
2.000
|
Hsc_gene_15032.t1;Hsc_gene_15032.t2
|
Hsc_gene_15032.t1;Hsc_gene_15032.t2
|
— |
Q9FKX5.1 NEP1-interacting protein-like 1 [Arabidopsis thaliana]
|
XP_020219623.1 E3 ubiquitin-protein ligase RING1-like [Cajanus cajan]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.940|GO:0003674_0.737|GO:0008152_0.627|GO:0043170_0.627|GO:0005575_0.623|GO:0110165_0.623|GO:0019538_0.588|GO:0044238_0.588|GO:0003824_0.583|GO:0140096_0.583|GO:0016740_0.571|GO:0016746_0.571|GO:0016755_0.571|GO:0019787_0.571|GO:0004842_0.568|GO:0036211_0.544|GO:0043412_0.544|GO:0016020_0.535|GO:0043687_0.527|GO:0070647_0.527|GO:0016567_0.524|GO:0032446_0.524|GO:0009987_0.514
|
IPR001841+241-284_242-283_242-284+|IPR013083+207-288+
|
SM00184+242-283+
|
PF13639+241-284+Ring_finger_domain
|
— |
PTHR46539+177-432+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
290-479
|
1.000
|
1-289
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
56611.420
|
5.596
|
-8.000
|
37.370
|
7.307
|
64.509
|
35.491
|
18.580
|
18.789
|
32.985
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
156.227
|
2.436
|
6.989
|
61.563
|
67.184
|
17.857
|
15.215
|
18.223
|
108.247
|
531.259
|
349.968
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.288
|
4.518
|
3.247
|
— |
-1.898
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.