Hg_chrom1_TN10mRNA_837
Organism: Heterodera glycines Gene Locus: chr1:11663987-11668363 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.86 | 0.983 | 1.472 | 0.85 | 1.526 | 0.632 | 1.132 | 1.585 | 0.469 | 0.571 | 0.427 | 1.243 | 1.467 | 0.609 | 2.731 | 0.604 | 0.75 | 0.8 | 1.083 | 1.45 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_801
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
4.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
DRGDRGGGGGGGGRDRRRR
|
42-62
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.839
|
0.072
|
0.010
|
0.295
|
0.057
|
0.016
|
0.023
|
0.003
|
0.070
|
0.301
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000754
|
5.000
|
1.000
|
Hsc_gene_21414.t1
|
Hsc_gene_21414.t1
|
— |
A1A4K8.1 Splicing factor U2AF 35 kDa subunit [Bos taurus]
|
KAI3414245.1 Splicing factor U2AF 26 kDa subunit [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0003676|GO:0003723|GO:0046872|GO:0089701
|
GO:0005575_0.820|GO:0110165_0.809|GO:0005622_0.738|GO:0008150_0.709|GO:0016020_0.681|GO:0043226_0.681|GO:0043229_0.666|GO:0043227_0.631|GO:0043231_0.618|GO:0005634_0.610|GO:0003674_0.594|GO:0009987_0.522|GO:0005488_0.521
|
IPR000504+93-183_122-176+|IPR000571+185-212+|IPR003954+107-179+|IPR009145+100-276_111-126_140-162_167-191_202-214+|IPR012677+93-182+|IPR035979+115-186+
|
SM00361+107-179+
|
PF00076+122-176+RNA_recognition_motif
|
G3DSA:3.30.70.330:FF:000122+92-182+Splicing_factor_U2AF_small_subunit
|
PTHR12620+100-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56;237-284
|
1.000
|
57-236
|
7c07_Y
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
33019.370
|
6.759
|
1.500
|
36.620
|
14.789
|
52.113
|
47.887
|
19.366
|
17.254
|
48.944
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
364.354
|
1000.636
|
498.178
|
423.378
|
366.197
|
297.337
|
117.221
|
191.005
|
82.210
|
447.159
|
290.752
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.234
|
-1.378
|
— |
-0.242
|
-0.286
|
-1.334
|
-0.744
|
-0.563
|
-2.579
|
— | — | — | — |
No JSON data available for plots.