Hg_chrom1_TN10mRNA_838
Organism: Heterodera glycines Gene Locus: chr1:11669119-11669602 Feature type: polypeptideProtein Sequence
Length: 42
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.277 | 1.661 | 0.866 | 0.821 | 0.397 | 0.0 | 1.984 | 5.952 | 2.646 | 0.0 | 0.722 | 1.401 | 1.323 | 0.458 | 1.458 | 0.34 | 0.781 | 1.804 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_802
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.941
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.430
|
0.528
|
0.391
|
0.489
|
0.170
|
0.032
|
0.081
|
0.043
|
0.038
|
0.163
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001065
|
4.000
|
1.000
|
Hsc_gene_21386.t1
|
Hsc_gene_12458.t1;Hsc_gene_21386.t1;Hsc_gene_24003.t1;Hsc_gene_24003.t2
|
— |
Q4PMB3.1 Small ribosomal subunit protein eS4 [Ixodes scapularis]
|
KAI3414259.1 40S ribosomal protein S4 [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.828|GO:0110165_0.824|GO:0005622_0.650|GO:0003674_0.601|GO:0008150_0.568|GO:0043226_0.549|GO:0043229_0.549|GO:0005737_0.531
|
IPR014722+1-39+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-42
|
6xu8_AE
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.909
|
4577.230
|
9.517
|
4.500
|
30.952
|
16.667
|
45.238
|
54.762
|
23.810
|
7.143
|
54.762
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
202.343
|
555.298
|
421.972
|
271.855
|
197.525
|
193.711
|
99.331
|
221.645
|
75.295
|
93.278
|
85.571
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.626
|
-1.168
|
-0.526
|
-0.491
|
— |
-0.955
|
— |
-1.016
|
— | — | — | — | — |
No JSON data available for plots.