Hg_chrom1_TN10mRNA_841
Organism: Heterodera glycines Gene Locus: chr1:11685823-11688825 Feature type: polypeptideProtein Sequence
Length: 162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 2.584 | 0.786 | 1.49 | 0.926 | 1.108 | 0.588 | 0.617 | 1.783 | 1.418 | 1.122 | 2.905 | 1.2 | 0.594 | 1.26 | 0.705 | 0.506 | 0.655 | 0.475 | 0.363 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_805
|
— | — |
1.111
|
2.000
|
— |
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
RKGDDQRKRRKKRMP
|
18-54
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.254
|
0.068
|
0.131
|
0.354
|
0.543
|
0.342
|
0.400
|
0.033
|
0.213
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005746
|
2.000
|
0.000
|
0.000
|
— | — |
P0CH01.1 Putative RING-H2 finger protein ATL21A [Arabidopsis thaliana]
|
XP_027771442.1 RING-H2 finger protein ATL56-like [Solanum pennellii]
|
CAA2633381
|
0.450
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.923|GO:0003674_0.677|GO:0008152_0.578|GO:0043170_0.578|GO:0009987_0.571|GO:0044238_0.540|GO:0003824_0.535|GO:0019538_0.526|GO:0140096_0.523|GO:0016740_0.518|GO:0005575_0.515|GO:0110165_0.512|GO:0016746_0.510|GO:0016755_0.510|GO:0019787_0.509|GO:0004842_0.506
|
IPR001841+91-135_93-134_93-135+|IPR013083+60-139+
|
SM00184+93-134+
|
PF13639+91-135+Ring_finger_domain
|
— |
PTHR46539+73-138+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
159-162
|
1.000
|
1-158
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
18497.590
|
8.843
|
7.000
|
24.691
|
7.407
|
48.148
|
51.852
|
14.815
|
9.877
|
45.679
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
53.516
|
1.235
|
20.443
|
19.257
|
7.611
|
3.423
|
0.610
|
1.533
|
169.953
|
86.377
|
122.195
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.827
|
3.834
|
— |
-1.361
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.