Hg_chrom1_TN10mRNA_842
Organism: Heterodera glycines Gene Locus: chr1:11698385-11699373 Feature type: polypeptideProtein Sequence
Length: 268
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.564 | 1.215 | 0.678 | 0.515 | 1.182 | 0.861 | 0.311 | 1.306 | 1.741 | 1.361 | 1.809 | 1.317 | 1.658 | 0.646 | 0.914 | 1.333 | 0.795 | 0.905 | 1.435 | 0.329 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_806
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— |
KVKK,KFKKRHRIVSRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.669
|
0.237
|
0.070
|
0.433
|
0.332
|
0.169
|
0.249
|
0.036
|
0.250
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000755
|
2.000
|
4.000
|
Hsc_gene_12224.t1;Hsc_gene_12224.t2;Hsc_gene_12224.t3;Hsc_gene_12224.t4
|
— | — | — |
XP_029162654.1 uncharacterized protein LOC114934181 [Nylanderia fulva]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.933|GO:0110165_0.926|GO:0005622_0.897|GO:0043226_0.874|GO:0016020_0.873|GO:0043229_0.860|GO:0043227_0.821|GO:0043231_0.800|GO:0005634_0.650
|
IPR006600+22-96_28-96_47-96+|IPR009057+27-90+|IPR050863+41-254+
|
SM00674+28-96+
|
PF03221+47-96+Tc5_transposase_DNA-binding_domain
|
— |
PTHR19303+41-254+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-268
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
30990.200
|
10.330
|
18.500
|
29.851
|
11.567
|
52.612
|
47.388
|
19.030
|
10.821
|
41.418
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
3.129
|
0.154
|
3.025
|
2.224
|
0.533
|
0.000
|
0.000
|
0.000
|
13.467
|
1.365
|
6.551
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.073
|
3.721
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.