Hg_chrom1_TN10mRNA_844
Organism: Heterodera glycines Gene Locus: chr1:11709682-11712217 Feature type: polypeptideProtein Sequence
Length: 709
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.968 | 0.82 | 1.103 | 0.486 | 1.387 | 1.664 | 0.588 | 1.34 | 1.128 | 1.372 | 1.09 | 0.747 | 1.215 | 0.759 | 1.554 | 0.826 | 1.272 | 0.492 | 0.868 | 0.207 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_808
|
— | — |
1.556
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.710
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRNLAEKIVDVIDRDRSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.793
|
0.135
|
0.014
|
0.346
|
0.146
|
0.049
|
0.058
|
0.006
|
0.113
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000079
|
6.000
|
11.000
|
Hsc_gene_11676.t1;Hsc_gene_24520.t1;Hsc_gene_24520.t2;Hsc_gene_24523.t1;Hsc_gene_24523.t2;Hsc_gene_3438.t1;Hsc_gene_5165.t1;Hsc_gene_5520.t1;Hsc_gene_5520.t2;Hsc_gene_5521.t1;Hsc_gene_5521.t2
|
Hsc_gene_19189.t1;Hsc_gene_22056.t1;Hsc_gene_24520.t1;Hsc_gene_3114.t1;Hsc_gene_762.t1
|
— | — |
PIC47987.1 hypothetical protein B9Z55_007137 [Caenorhabditis nigoni]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009689+236-401+
|
— |
PF06918+236-401+Protein_of_unknown_function_(DUF1280)
|
— |
PTHR31424+128-428+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-199;678-709
|
1.000
|
200-677
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
80530.100
|
8.049
|
12.500
|
31.876
|
8.886
|
55.430
|
44.570
|
17.489
|
14.386
|
44.993
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
39.575
|
54.276
|
41.891
|
47.933
|
34.209
|
25.936
|
32.057
|
77.930
|
40.413
|
24.994
|
31.602
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.601
|
— | — |
-0.518
|
— | — |
1.479
|
-1.136
|
— | — | — | — | — |
No JSON data available for plots.