Hg_chrom1_TN10mRNA_847
Organism: Heterodera glycines Gene Locus: chr1:11728676-11729582 Feature type: polypeptideProtein Sequence
Length: 83
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.42 | 3.082 | 0.657 | 2.077 | 1.004 | 0.927 | 0.287 | 1.807 | 2.142 | 0.651 | 1.825 | 0.709 | 2.343 | 1.622 | 0.492 | 0.516 | 0.198 | 0.73 | 0.927 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_811
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.429
|
0.435
|
0.014
|
0.577
|
0.141
|
0.125
|
0.108
|
0.012
|
0.129
|
0.183
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005746
|
2.000
|
0.000
|
0.000
|
— | — |
Q9LSW9.1 RING-H2 finger protein ATL16 [Arabidopsis thaliana]
|
XP_014497436.1 RING-H2 finger protein ATL33-like [Vigna radiata var. radiata]
|
KAI0498295
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016567|GO:0016740
|
GO:0008150_0.899|GO:0003674_0.667|GO:0005575_0.615|GO:0110165_0.603|GO:0008152_0.594|GO:0043170_0.565|GO:0044238_0.542|GO:0009987_0.516|GO:0003824_0.508|GO:0140096_0.503
|
IPR001841+29-56_32-56+|IPR013083+13-81+|IPR044600+28-62+
|
— |
PF13639+29-56+Ring_finger_domain
|
— |
PTHR46913+28-62+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
83-83
|
1.000
|
1-82
|
1x4j_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
9641.210
|
8.678
|
5.500
|
27.711
|
13.253
|
49.398
|
50.602
|
18.072
|
9.639
|
46.988
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
12.621
|
0.923
|
1.821
|
0.498
|
0.156
|
0.122
|
0.606
|
0.559
|
0.000
|
53.461
|
30.549
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — |
-7.859
|
— | — |
No JSON data available for plots.