Hg_chrom1_TN10mRNA_85
Organism: Heterodera glycines Gene Locus: chr1:577967-580072 Feature type: polypeptideProtein Sequence
Length: 184
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.569 | 0.506 | 0.0 | 1.312 | 0.634 | 0.697 | 0.453 | 1.902 | 2.657 | 1.322 | 0.494 | 0.959 | 2.868 | 1.463 | 1.331 | 1.32 | 0.802 | 0.659 | 2.09 | 0.799 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_81
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — |
46-71
|
0.988
|
29-57
|
0.990
|
— | — |
0.001
|
— | — |
0.480
|
0.153
|
0.033
|
0.407
|
0.248
|
0.121
|
0.192
|
0.117
|
0.115
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002867
|
2.000
|
1.000
|
Hsc_gene_14857.t1
|
Hsc_gene_12575.t1;Hsc_gene_14857.t1;Hsc_gene_2107.t1
|
— |
Q6ZQ08.2 CCR4-NOT transcription complex subunit 1 [Mus musculus]
|
KAH7731312.1 CCR4-Not complex componentNot1 superfamily [Aphelenchus avenae]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0017148|GO:0030015
|
GO:0008150_0.932|GO:0005575_0.794|GO:0110165_0.794|GO:0009987_0.730|GO:0005622_0.687|GO:0005737_0.687|GO:0065007_0.660|GO:0050789_0.642|GO:0032502_0.611|GO:0043226_0.570|GO:0043229_0.556|GO:0016020_0.540|GO:0032501_0.509
|
IPR007196+53-123+|IPR040398+53-122+
|
— |
PF04054+53-123+CCR4-Not_complex_component,_Not1
|
— |
PTHR13162+53-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-184
|
4c0d_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
21389.440
|
10.029
|
14.500
|
17.391
|
19.565
|
36.413
|
63.587
|
13.587
|
3.804
|
40.761
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
red
|
44.587
|
5.792
|
6.623
|
2.373
|
3.316
|
2.502
|
27.300
|
17.950
|
0.000
|
170.371
|
97.355
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.426
|
-1.367
|
— | — |
3.462
|
2.732
|
0.753
|
— | — | — | — | — |
No JSON data available for plots.