Hg_chrom1_TN10mRNA_850
Organism: Heterodera glycines Gene Locus: chr1:11741410-11744741 Feature type: polypeptideProtein Sequence
Length: 132
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.498 | 0.352 | 0.0 | 0.522 | 0.505 | 0.389 | 0.812 | 1.515 | 1.347 | 1.945 | 0.23 | 0.446 | 3.157 | 0.874 | 0.155 | 1.732 | 0.621 | 1.377 | 1.748 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_814
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom1_TN10mRNA_850
|
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.126
|
0.122
|
0.006
|
0.136
|
0.516
|
0.550
|
0.773
|
0.011
|
0.347
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q18319.3 Vacuolar protein sorting-associated protein 55 homolog [Caenorhabditis elegans]
|
KAH7727371.1 Protein C30B5.2 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.772|GO:0110165_0.768|GO:0016020_0.744|GO:0005622_0.640|GO:0005737_0.640|GO:0071944_0.635|GO:0005886_0.622|GO:0005773_0.586|GO:0043226_0.586|GO:0043227_0.586|GO:0043229_0.586|GO:0043231_0.586|GO:0008150_0.524
|
IPR007262+8-120_8-128+
|
— |
PF04133+8-120+Vacuolar_protein_sorting_55
|
— |
PTHR12050+8-128+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-132
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
14184.690
|
6.856
|
1.000
|
8.333
|
19.697
|
27.273
|
72.727
|
5.303
|
3.030
|
52.273
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
2303.906
|
1191.341
|
1273.699
|
1052.078
|
1453.193
|
2066.769
|
1439.500
|
2099.614
|
1622.502
|
4896.641
|
3493.439
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.133
|
-0.317
|
-0.167
|
0.434
|
0.523
|
-0.512
|
— |
-0.402
|
— | — | — | — | — |
No JSON data available for plots.