SCN Proteipedia

Hg_chrom1_TN10mRNA_852

Organism: Heterodera glycines Gene Locus: chr1:11750598-11753296 Feature type: polypeptide

Protein Sequence

Length: 424

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.85	0.932	0.386	0.569	0.432	0.907	0.842	1.533	2.254	1.817	0.393	1.387	2.031	0.771	0.578	1.449	0.851	0.893	0.907	1.041	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_816	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom1_TN10mRNA_852	26-Not_Clustered	0.855

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.071	0.148	0.025	0.107	0.454	0.577	0.459	0.157	0.615	0.094

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001693	3.000	1.000	Hsc_gene_7861.t1	—	—	Q29611.1 Battenin [Canis lupus familiaris]	KAF7632702.1 Battenin [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020	GO:0005575_0.891\|GO:0110165_0.891\|GO:0016020_0.866\|GO:0008150_0.844\|GO:0009987_0.776\|GO:0005622_0.767\|GO:0005737_0.767\|GO:0043226_0.739\|GO:0043227_0.739\|GO:0071944_0.734\|GO:0043229_0.726\|GO:0043231_0.726\|GO:0005886_0.722\|GO:0005773_0.720\|GO:0006810_0.711\|GO:0051179_0.711\|GO:0051234_0.711\|GO:0065007_0.684\|GO:0071705_0.620\|GO:0055085_0.609\|GO:0065008_0.607\|GO:0042592_0.593\|GO:0048878_0.590\|GO:0012505_0.585\|GO:0019725_0.585\|GO:0055082_0.583\|GO:0050896_0.553\|GO:0003674_0.552\|GO:0050789_0.538\|GO:0000323_0.522\|GO:0051716_0.522\|GO:0050794_0.520\|GO:0006865_0.512\|GO:0006873_0.510\|GO:0030003_0.510\|GO:0050801_0.510\|GO:0055080_0.510	IPR003492+5-418_12-418_13-35_74-90_128-150_158-178_256-278_300-315_327-339_350-374_387-416+\|IPR018460+2-420+\|IPR036259+8-422_11-414+	—	PF02487+12-418+CLN3_protein	—	PTHR10981+5-418+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-424	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.820	46706.800	8.174	9.500	13.208	15.094	36.085	63.915	8.491	4.717	47.406

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	red	404.305	248.092	312.220	250.042	459.772	1219.084	299.142	587.254	7.602	497.283	287.419

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	-0.212	0.847	1.421	-2.023	-1.154	-0.838	-6.165	5.259	—	—	—

No JSON data available for plots.

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